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MB21D2 (Mab-21 domain containing 2)

Identity

Alias_namesC3orf59
chromosome 3 open reading frame 59
Other alias
HGNC (Hugo) MB21D2
LocusID (NCBI) 151963
Atlas_Id 68824
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 192796816 and ends at 192918161 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MB21D2 (3q29) / MAP1S (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MB21D2   30438
Cards
Entrez_Gene (NCBI)MB21D2  151963  Mab-21 domain containing 2
AliasesC3orf59
GeneCards (Weizmann)MB21D2
Ensembl hg19 (Hinxton)ENSG00000180611 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180611 [Gene_View]  chr3:192796816-192918161 [Contig_View]  MB21D2 [Vega]
ICGC DataPortalENSG00000180611
TCGA cBioPortalMB21D2
AceView (NCBI)MB21D2
Genatlas (Paris)MB21D2
WikiGenes151963
SOURCE (Princeton)MB21D2
Genetics Home Reference (NIH)MB21D2
Genomic and cartography
GoldenPath hg38 (UCSC)MB21D2  -     chr3:192796816-192918161 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MB21D2  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblMB21D2 - 3q29 [CytoView hg19]  MB21D2 - 3q29 [CytoView hg38]
Mapping of homologs : NCBIMB21D2 [Mapview hg19]  MB21D2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK002025 AK056276 AK290447 BC013123 BC036194
RefSeq transcript (Entrez)NM_178496
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MB21D2
Cluster EST : UnigeneHs.151443 [ NCBI ]
CGAP (NCI)Hs.151443
Alternative Splicing GalleryENSG00000180611
Gene ExpressionMB21D2 [ NCBI-GEO ]   MB21D2 [ EBI - ARRAY_EXPRESS ]   MB21D2 [ SEEK ]   MB21D2 [ MEM ]
Gene Expression Viewer (FireBrowse)MB21D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151963
GTEX Portal (Tissue expression)MB21D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYB1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYB1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYB1
Splice isoforms : SwissVarQ8IYB1
PhosPhoSitePlusQ8IYB1
Domains : Interpro (EBI)Mab-21_dom   
Domain families : Pfam (Sanger)Mab-21 (PF03281)   
Domain families : Pfam (NCBI)pfam03281   
Domain families : Smart (EMBL)Mab-21 (SM01265)  
Conserved Domain (NCBI)MB21D2
DMDM Disease mutations151963
Blocks (Seattle)MB21D2
SuperfamilyQ8IYB1
Human Protein AtlasENSG00000180611
Peptide AtlasQ8IYB1
HPRD14092
IPIIPI00217748   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYB1
IntAct (EBI)Q8IYB1
FunCoupENSG00000180611
BioGRIDMB21D2
STRING (EMBL)MB21D2
ZODIACMB21D2
Ontologies - Pathways
QuickGOQ8IYB1
Ontology : AmiGOprotein complex binding  cadherin binding  
Ontology : EGO-EBIprotein complex binding  cadherin binding  
NDEx NetworkMB21D2
Atlas of Cancer Signalling NetworkMB21D2
Wikipedia pathwaysMB21D2
Orthology - Evolution
OrthoDB151963
GeneTree (enSembl)ENSG00000180611
Phylogenetic Trees/Animal Genes : TreeFamMB21D2
HOVERGENQ8IYB1
HOGENOMQ8IYB1
Homologs : HomoloGeneMB21D2
Homology/Alignments : Family Browser (UCSC)MB21D2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMB21D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MB21D2
dbVarMB21D2
ClinVarMB21D2
1000_GenomesMB21D2 
Exome Variant ServerMB21D2
ExAC (Exome Aggregation Consortium)MB21D2 (select the gene name)
Genetic variants : HAPMAP151963
Genomic Variants (DGV)MB21D2 [DGVbeta]
DECIPHERMB21D2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMB21D2 
Mutations
ICGC Data PortalMB21D2 
TCGA Data PortalMB21D2 
Broad Tumor PortalMB21D2
OASIS PortalMB21D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMB21D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMB21D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MB21D2
DgiDB (Drug Gene Interaction Database)MB21D2
DoCM (Curated mutations)MB21D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MB21D2 (select a term)
intoGenMB21D2
Cancer3DMB21D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMB21D2
Genetic Testing Registry MB21D2
NextProtQ8IYB1 [Medical]
TSGene151963
GENETestsMB21D2
Target ValidationMB21D2
Huge Navigator MB21D2 [HugePedia]
snp3D : Map Gene to Disease151963
BioCentury BCIQMB21D2
ClinGenMB21D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151963
Chemical/Pharm GKB GenePA143485335
Clinical trialMB21D2
Miscellaneous
canSAR (ICR)MB21D2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMB21D2
EVEXMB21D2
GoPubMedMB21D2
iHOPMB21D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:26:59 CEST 2017

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