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MBD3L2 (methyl-CpG binding domain protein 3 like 2)

Identity

Other alias-
HGNC (Hugo) MBD3L2
LocusID (NCBI) 125997
Atlas_Id 41311
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7049340 and ends at 7051735 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MBD3L2   18532
Cards
Entrez_Gene (NCBI)MBD3L2  125997  methyl-CpG binding domain protein 3 like 2
Aliases
GeneCards (Weizmann)MBD3L2
Ensembl hg19 (Hinxton)ENSG00000230522 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230522 [Gene_View]  chr19:7049340-7051735 [Contig_View]  MBD3L2 [Vega]
ICGC DataPortalENSG00000230522
TCGA cBioPortalMBD3L2
AceView (NCBI)MBD3L2
Genatlas (Paris)MBD3L2
WikiGenes125997
SOURCE (Princeton)MBD3L2
Genetics Home Reference (NIH)MBD3L2
Genomic and cartography
GoldenPath hg38 (UCSC)MBD3L2  -     chr19:7049340-7051735 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MBD3L2  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblMBD3L2 - 19p13.2 [CytoView hg19]  MBD3L2 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIMBD3L2 [Mapview hg19]  MBD3L2 [Mapview hg38]
OMIM607964   
Gene and transcription
Genbank (Entrez)AF503919 BC172325
RefSeq transcript (Entrez)NM_144614
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MBD3L2
Cluster EST : UnigeneHs.567667 [ NCBI ]
CGAP (NCI)Hs.567667
Alternative Splicing GalleryENSG00000230522
Gene ExpressionMBD3L2 [ NCBI-GEO ]   MBD3L2 [ EBI - ARRAY_EXPRESS ]   MBD3L2 [ SEEK ]   MBD3L2 [ MEM ]
Gene Expression Viewer (FireBrowse)MBD3L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125997
GTEX Portal (Tissue expression)MBD3L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHZ7
Splice isoforms : SwissVarQ8NHZ7
PhosPhoSitePlusQ8NHZ7
Domains : Interpro (EBI)MBD2/MBD3_p55-bd    MeCpG-bd_2/3_C_dom   
Domain families : Pfam (Sanger)MBD_C (PF14048)    MBDa (PF16564)   
Domain families : Pfam (NCBI)pfam14048    pfam16564   
Conserved Domain (NCBI)MBD3L2
DMDM Disease mutations125997
Blocks (Seattle)MBD3L2
SuperfamilyQ8NHZ7
Human Protein AtlasENSG00000230522
Peptide AtlasQ8NHZ7
HPRD12139
IPIIPI00180476   IPI00942059   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHZ7
IntAct (EBI)Q8NHZ7
FunCoupENSG00000230522
BioGRIDMBD3L2
STRING (EMBL)MBD3L2
ZODIACMBD3L2
Ontologies - Pathways
QuickGOQ8NHZ7
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nucleus  methylation-dependent chromatin silencing  methyl-CpG binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nucleus  methylation-dependent chromatin silencing  methyl-CpG binding  
NDEx NetworkMBD3L2
Atlas of Cancer Signalling NetworkMBD3L2
Wikipedia pathwaysMBD3L2
Orthology - Evolution
OrthoDB125997
GeneTree (enSembl)ENSG00000230522
Phylogenetic Trees/Animal Genes : TreeFamMBD3L2
HOVERGENQ8NHZ7
HOGENOMQ8NHZ7
Homologs : HomoloGeneMBD3L2
Homology/Alignments : Family Browser (UCSC)MBD3L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMBD3L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MBD3L2
dbVarMBD3L2
ClinVarMBD3L2
1000_GenomesMBD3L2 
Exome Variant ServerMBD3L2
ExAC (Exome Aggregation Consortium)MBD3L2 (select the gene name)
Genetic variants : HAPMAP125997
Genomic Variants (DGV)MBD3L2 [DGVbeta]
DECIPHERMBD3L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMBD3L2 
Mutations
ICGC Data PortalMBD3L2 
TCGA Data PortalMBD3L2 
Broad Tumor PortalMBD3L2
OASIS PortalMBD3L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMBD3L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMBD3L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MBD3L2
DgiDB (Drug Gene Interaction Database)MBD3L2
DoCM (Curated mutations)MBD3L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MBD3L2 (select a term)
intoGenMBD3L2
Cancer3DMBD3L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607964   
Orphanet
MedgenMBD3L2
Genetic Testing Registry MBD3L2
NextProtQ8NHZ7 [Medical]
TSGene125997
GENETestsMBD3L2
Target ValidationMBD3L2
Huge Navigator MBD3L2 [HugePedia]
snp3D : Map Gene to Disease125997
BioCentury BCIQMBD3L2
ClinGenMBD3L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD125997
Chemical/Pharm GKB GenePA38567
Clinical trialMBD3L2
Miscellaneous
canSAR (ICR)MBD3L2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMBD3L2
EVEXMBD3L2
GoPubMedMBD3L2
iHOPMBD3L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:58:50 CEST 2017

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