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MBD3L3 (methyl-CpG binding domain protein 3 like 3)

Identity

Other alias-
HGNC (Hugo) MBD3L3
LocusID (NCBI) 653657
Atlas_Id 68825
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7056205 and ends at 7058634 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MBD3L3   37205
Cards
Entrez_Gene (NCBI)MBD3L3  653657  methyl-CpG binding domain protein 3 like 3
Aliases
GeneCards (Weizmann)MBD3L3
Ensembl hg19 (Hinxton)ENSG00000182315 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182315 [Gene_View]  chr19:7056205-7058634 [Contig_View]  MBD3L3 [Vega]
ICGC DataPortalENSG00000182315
TCGA cBioPortalMBD3L3
AceView (NCBI)MBD3L3
Genatlas (Paris)MBD3L3
WikiGenes653657
SOURCE (Princeton)MBD3L3
Genetics Home Reference (NIH)MBD3L3
Genomic and cartography
GoldenPath hg38 (UCSC)MBD3L3  -     chr19:7056205-7058634 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MBD3L3  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblMBD3L3 - 19p13.2 [CytoView hg19]  MBD3L3 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIMBD3L3 [Mapview hg19]  MBD3L3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001164425
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MBD3L3
Cluster EST : UnigeneHs.448960 [ NCBI ]
CGAP (NCI)Hs.448960
Alternative Splicing GalleryENSG00000182315
Gene ExpressionMBD3L3 [ NCBI-GEO ]   MBD3L3 [ EBI - ARRAY_EXPRESS ]   MBD3L3 [ SEEK ]   MBD3L3 [ MEM ]
Gene Expression Viewer (FireBrowse)MBD3L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653657
GTEX Portal (Tissue expression)MBD3L3
Human Protein AtlasENSG00000182315-MBD3L3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NE82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NE82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NE82
Splice isoforms : SwissVarA6NE82
PhosPhoSitePlusA6NE82
Domains : Interpro (EBI)MBD2/MBD3_p55-bd    MeCpG-bd_2/3_C_dom   
Domain families : Pfam (Sanger)MBD_C (PF14048)    MBDa (PF16564)   
Domain families : Pfam (NCBI)pfam14048    pfam16564   
Conserved Domain (NCBI)MBD3L3
DMDM Disease mutations653657
Blocks (Seattle)MBD3L3
SuperfamilyA6NE82
Human Protein Atlas [tissue]ENSG00000182315-MBD3L3 [tissue]
Peptide AtlasA6NE82
IPIIPI00515051   
Protein Interaction databases
DIP (DOE-UCLA)A6NE82
IntAct (EBI)A6NE82
FunCoupENSG00000182315
BioGRIDMBD3L3
STRING (EMBL)MBD3L3
ZODIACMBD3L3
Ontologies - Pathways
QuickGOA6NE82
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nucleus  methylation-dependent chromatin silencing  transcription, DNA-templated  methyl-CpG binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nucleus  methylation-dependent chromatin silencing  transcription, DNA-templated  methyl-CpG binding  
NDEx NetworkMBD3L3
Atlas of Cancer Signalling NetworkMBD3L3
Wikipedia pathwaysMBD3L3
Orthology - Evolution
OrthoDB653657
GeneTree (enSembl)ENSG00000182315
Phylogenetic Trees/Animal Genes : TreeFamMBD3L3
HOVERGENA6NE82
HOGENOMA6NE82
Homologs : HomoloGeneMBD3L3
Homology/Alignments : Family Browser (UCSC)MBD3L3
Gene fusions - Rearrangements
Tumor Fusion PortalMBD3L3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMBD3L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MBD3L3
dbVarMBD3L3
ClinVarMBD3L3
1000_GenomesMBD3L3 
Exome Variant ServerMBD3L3
ExAC (Exome Aggregation Consortium)ENSG00000182315
GNOMAD BrowserENSG00000182315
Genetic variants : HAPMAP653657
Genomic Variants (DGV)MBD3L3 [DGVbeta]
DECIPHERMBD3L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMBD3L3 
Mutations
ICGC Data PortalMBD3L3 
TCGA Data PortalMBD3L3 
Broad Tumor PortalMBD3L3
OASIS PortalMBD3L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMBD3L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMBD3L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MBD3L3
DgiDB (Drug Gene Interaction Database)MBD3L3
DoCM (Curated mutations)MBD3L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MBD3L3 (select a term)
intoGenMBD3L3
Cancer3DMBD3L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMBD3L3
MedgenMBD3L3
Genetic Testing Registry MBD3L3
NextProtA6NE82 [Medical]
TSGene653657
GENETestsMBD3L3
Target ValidationMBD3L3
Huge Navigator MBD3L3 [HugePedia]
snp3D : Map Gene to Disease653657
BioCentury BCIQMBD3L3
ClinGenMBD3L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653657
Chemical/Pharm GKB GenePA166049025
Clinical trialMBD3L3
Miscellaneous
canSAR (ICR)MBD3L3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMBD3L3
EVEXMBD3L3
GoPubMedMBD3L3
iHOPMBD3L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:56:00 CET 2017

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