Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MBD3L4 (methyl-CpG binding domain protein 3 like 4)

Identity

Other alias-
HGNC (Hugo) MBD3L4
LocusID (NCBI) 653656
Atlas_Id 68826
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7037744 and ends at 7040173 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MBD3L4   37206
Cards
Entrez_Gene (NCBI)MBD3L4  653656  methyl-CpG binding domain protein 3 like 4
Aliases
GeneCards (Weizmann)MBD3L4
Ensembl hg19 (Hinxton)ENSG00000205718 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205718 [Gene_View]  chr19:7037744-7040173 [Contig_View]  MBD3L4 [Vega]
ICGC DataPortalENSG00000205718
TCGA cBioPortalMBD3L4
AceView (NCBI)MBD3L4
Genatlas (Paris)MBD3L4
WikiGenes653656
SOURCE (Princeton)MBD3L4
Genetics Home Reference (NIH)MBD3L4
Genomic and cartography
GoldenPath hg38 (UCSC)MBD3L4  -     chr19:7037744-7040173 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MBD3L4  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblMBD3L4 - 19p13.2 [CytoView hg19]  MBD3L4 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIMBD3L4 [Mapview hg19]  MBD3L4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001164419
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MBD3L4
Cluster EST : UnigeneHs.723810 [ NCBI ]
CGAP (NCI)Hs.723810
Alternative Splicing GalleryENSG00000205718
Gene ExpressionMBD3L4 [ NCBI-GEO ]   MBD3L4 [ EBI - ARRAY_EXPRESS ]   MBD3L4 [ SEEK ]   MBD3L4 [ MEM ]
Gene Expression Viewer (FireBrowse)MBD3L4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653656
GTEX Portal (Tissue expression)MBD3L4
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDZ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDZ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDZ8
Splice isoforms : SwissVarA6NDZ8
PhosPhoSitePlusA6NDZ8
Domains : Interpro (EBI)MBD2/MBD3_p55-bd    MeCpG-bd_2/3_C_dom   
Domain families : Pfam (Sanger)MBD_C (PF14048)    MBDa (PF16564)   
Domain families : Pfam (NCBI)pfam14048    pfam16564   
Conserved Domain (NCBI)MBD3L4
DMDM Disease mutations653656
Blocks (Seattle)MBD3L4
SuperfamilyA6NDZ8
Human Protein AtlasENSG00000205718
Peptide AtlasA6NDZ8
IPIIPI00742016   
Protein Interaction databases
DIP (DOE-UCLA)A6NDZ8
IntAct (EBI)A6NDZ8
FunCoupENSG00000205718
BioGRIDMBD3L4
STRING (EMBL)MBD3L4
ZODIACMBD3L4
Ontologies - Pathways
QuickGOA6NDZ8
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nucleus  methylation-dependent chromatin silencing  transcription, DNA-templated  methyl-CpG binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nucleus  methylation-dependent chromatin silencing  transcription, DNA-templated  methyl-CpG binding  
NDEx NetworkMBD3L4
Atlas of Cancer Signalling NetworkMBD3L4
Wikipedia pathwaysMBD3L4
Orthology - Evolution
OrthoDB653656
GeneTree (enSembl)ENSG00000205718
Phylogenetic Trees/Animal Genes : TreeFamMBD3L4
HOVERGENA6NDZ8
HOGENOMA6NDZ8
Homologs : HomoloGeneMBD3L4
Homology/Alignments : Family Browser (UCSC)MBD3L4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMBD3L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MBD3L4
dbVarMBD3L4
ClinVarMBD3L4
1000_GenomesMBD3L4 
Exome Variant ServerMBD3L4
ExAC (Exome Aggregation Consortium)MBD3L4 (select the gene name)
Genetic variants : HAPMAP653656
Genomic Variants (DGV)MBD3L4 [DGVbeta]
DECIPHERMBD3L4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMBD3L4 
Mutations
ICGC Data PortalMBD3L4 
TCGA Data PortalMBD3L4 
Broad Tumor PortalMBD3L4
OASIS PortalMBD3L4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMBD3L4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMBD3L4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MBD3L4
DgiDB (Drug Gene Interaction Database)MBD3L4
DoCM (Curated mutations)MBD3L4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MBD3L4 (select a term)
intoGenMBD3L4
Cancer3DMBD3L4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMBD3L4
Genetic Testing Registry MBD3L4
NextProtA6NDZ8 [Medical]
TSGene653656
GENETestsMBD3L4
Target ValidationMBD3L4
Huge Navigator MBD3L4 [HugePedia]
snp3D : Map Gene to Disease653656
BioCentury BCIQMBD3L4
ClinGenMBD3L4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653656
Chemical/Pharm GKB GenePA166049026
Clinical trialMBD3L4
Miscellaneous
canSAR (ICR)MBD3L4 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMBD3L4
EVEXMBD3L4
GoPubMedMBD3L4
iHOPMBD3L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:27:00 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.