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MBD3L5 (methyl-CpG binding domain protein 3 like 5)

Identity

Alias_namesmethyl-CpG binding domain protein 3-like 5
Other alias-
HGNC (Hugo) MBD3L5
LocusID (NCBI) 284428
Atlas_Id 68827
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7030583 and ends at 7033011 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MBD3L5   37204
Cards
Entrez_Gene (NCBI)MBD3L5  284428  methyl-CpG binding domain protein 3 like 5
Aliases
GeneCards (Weizmann)MBD3L5
Ensembl hg19 (Hinxton)ENSG00000237247 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237247 [Gene_View]  chr19:7030583-7033011 [Contig_View]  MBD3L5 [Vega]
ICGC DataPortalENSG00000237247
TCGA cBioPortalMBD3L5
AceView (NCBI)MBD3L5
Genatlas (Paris)MBD3L5
WikiGenes284428
SOURCE (Princeton)MBD3L5
Genetics Home Reference (NIH)MBD3L5
Genomic and cartography
GoldenPath hg38 (UCSC)MBD3L5  -     chr19:7030583-7033011 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MBD3L5  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblMBD3L5 - 19p13.2 [CytoView hg19]  MBD3L5 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIMBD3L5 [Mapview hg19]  MBD3L5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001136507
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MBD3L5
Cluster EST : UnigeneHs.717312 [ NCBI ]
CGAP (NCI)Hs.717312
Alternative Splicing GalleryENSG00000237247
Gene ExpressionMBD3L5 [ NCBI-GEO ]   MBD3L5 [ EBI - ARRAY_EXPRESS ]   MBD3L5 [ SEEK ]   MBD3L5 [ MEM ]
Gene Expression Viewer (FireBrowse)MBD3L5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284428
GTEX Portal (Tissue expression)MBD3L5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NJ08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NJ08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NJ08
Splice isoforms : SwissVarA6NJ08
PhosPhoSitePlusA6NJ08
Domains : Interpro (EBI)MBD2/MBD3_p55-bd    MeCpG-bd_2/3_C_dom   
Domain families : Pfam (Sanger)MBD_C (PF14048)    MBDa (PF16564)   
Domain families : Pfam (NCBI)pfam14048    pfam16564   
Conserved Domain (NCBI)MBD3L5
DMDM Disease mutations284428
Blocks (Seattle)MBD3L5
SuperfamilyA6NJ08
Human Protein AtlasENSG00000237247
Peptide AtlasA6NJ08
IPIIPI00176592   IPI00941984   
Protein Interaction databases
DIP (DOE-UCLA)A6NJ08
IntAct (EBI)A6NJ08
FunCoupENSG00000237247
BioGRIDMBD3L5
STRING (EMBL)MBD3L5
ZODIACMBD3L5
Ontologies - Pathways
QuickGOA6NJ08
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  nucleus  methylation-dependent chromatin silencing  methyl-CpG binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  nucleus  methylation-dependent chromatin silencing  methyl-CpG binding  
NDEx NetworkMBD3L5
Atlas of Cancer Signalling NetworkMBD3L5
Wikipedia pathwaysMBD3L5
Orthology - Evolution
OrthoDB284428
GeneTree (enSembl)ENSG00000237247
Phylogenetic Trees/Animal Genes : TreeFamMBD3L5
HOVERGENA6NJ08
HOGENOMA6NJ08
Homologs : HomoloGeneMBD3L5
Homology/Alignments : Family Browser (UCSC)MBD3L5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMBD3L5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MBD3L5
dbVarMBD3L5
ClinVarMBD3L5
1000_GenomesMBD3L5 
Exome Variant ServerMBD3L5
ExAC (Exome Aggregation Consortium)MBD3L5 (select the gene name)
Genetic variants : HAPMAP284428
Genomic Variants (DGV)MBD3L5 [DGVbeta]
DECIPHERMBD3L5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMBD3L5 
Mutations
ICGC Data PortalMBD3L5 
TCGA Data PortalMBD3L5 
Broad Tumor PortalMBD3L5
OASIS PortalMBD3L5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMBD3L5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMBD3L5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MBD3L5
DgiDB (Drug Gene Interaction Database)MBD3L5
DoCM (Curated mutations)MBD3L5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MBD3L5 (select a term)
intoGenMBD3L5
Cancer3DMBD3L5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMBD3L5
Genetic Testing Registry MBD3L5
NextProtA6NJ08 [Medical]
TSGene284428
GENETestsMBD3L5
Target ValidationMBD3L5
Huge Navigator MBD3L5 [HugePedia]
snp3D : Map Gene to Disease284428
BioCentury BCIQMBD3L5
ClinGenMBD3L5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284428
Chemical/Pharm GKB GenePA166049024
Clinical trialMBD3L5
Miscellaneous
canSAR (ICR)MBD3L5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMBD3L5
EVEXMBD3L5
GoPubMedMBD3L5
iHOPMBD3L5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:36 CEST 2017

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