Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MC1R (melanocortin 1 receptor)


Alias (NCBI)CMM5
HGNC (Hugo) MC1R
HGNC Alias symbMSH-R
HGNC Alias namealpha melanocyte stimulating hormone receptor
HGNC Previous namemelanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)
LocusID (NCBI) 4157
Atlas_Id 191
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89918862 and ends at 89920972 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACY1 (3p21.2)::MC1R (16q24.3)TCF25 (16q24.3)::MC1R (16q24.3)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 2 ]
  Dysplastic nevus syndrome (DNS) Familial melanoma

External links

HGNC (Hugo)MC1R   6929
Entrez_Gene (NCBI)MC1R    melanocortin 1 receptor
AliasesCMM5; MSH-R; SHEP2
GeneCards (Weizmann)MC1R
Ensembl hg19 (Hinxton)ENSG00000258839 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258839 [Gene_View]  ENSG00000258839 [Sequence]  chr16:89918862-89920972 [Contig_View]  MC1R [Vega]
ICGC DataPortalENSG00000258839
TCGA cBioPortalMC1R
AceView (NCBI)MC1R
Genatlas (Paris)MC1R
SOURCE (Princeton)MC1R
Genetics Home Reference (NIH)MC1R
Genomic and cartography
GoldenPath hg38 (UCSC)MC1R  -     chr16:89918862-89920972 +  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MC1R  -     16q24.3   [Description]    (hg19-Feb_2009)
GoldenPathMC1R - 16q24.3 [CytoView hg19]  MC1R - 16q24.3 [CytoView hg38]
Genome Data Viewer NCBIMC1R [Mapview hg19]  
OMIM155555   203200   266300   613098   613099   
Gene and transcription
Genbank (Entrez)AK024232 AK054666 AK225902 AK311630 BC007856
RefSeq transcript (Entrez)NM_002386
Consensus coding sequences : CCDS (NCBI)MC1R
Gene ExpressionMC1R [ NCBI-GEO ]   MC1R [ EBI - ARRAY_EXPRESS ]   MC1R [ SEEK ]   MC1R [ MEM ]
Gene Expression Viewer (FireBrowse)MC1R [ Firebrowse - Broad ]
GenevisibleExpression of MC1R in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4157
GTEX Portal (Tissue expression)MC1R
Human Protein AtlasENSG00000258839-MC1R [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MC1R
Human Protein Atlas [tissue]ENSG00000258839-MC1R [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed352 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:19:54 CET 2022

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