Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MC1R (melanocortin 1 receptor)

Identity

Alias (NCBI)CMM5
MSH-R
SHEP2
HGNC (Hugo) MC1R
HGNC Alias symbMSH-R
HGNC Alias namealpha melanocyte stimulating hormone receptor
HGNC Previous namemelanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)
LocusID (NCBI) 4157
Atlas_Id 191
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89918862 and ends at 89920972 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACY1 (3p21.2)::MC1R (16q24.3)TCF25 (16q24.3)::MC1R (16q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 2 ]
  Dysplastic nevus syndrome (DNS) Familial melanoma

External links

Nomenclature
HGNC (Hugo)MC1R   6929
Cards
Entrez_Gene (NCBI)MC1R    melanocortin 1 receptor
AliasesCMM5; MSH-R; SHEP2
GeneCards (Weizmann)MC1R
Ensembl hg19 (Hinxton)ENSG00000258839 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258839 [Gene_View]  ENSG00000258839 [Sequence]  chr16:89918862-89920972 [Contig_View]  MC1R [Vega]
ICGC DataPortalENSG00000258839
TCGA cBioPortalMC1R
AceView (NCBI)MC1R
Genatlas (Paris)MC1R
SOURCE (Princeton)MC1R
Genetics Home Reference (NIH)MC1R
Genomic and cartography
GoldenPath hg38 (UCSC)MC1R  -     chr16:89918862-89920972 +  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MC1R  -     16q24.3   [Description]    (hg19-Feb_2009)
GoldenPathMC1R - 16q24.3 [CytoView hg19]  MC1R - 16q24.3 [CytoView hg38]
ImmunoBaseENSG00000258839
Genome Data Viewer NCBIMC1R [Mapview hg19]  
OMIM155555   203200   266300   613098   613099   
Gene and transcription
Genbank (Entrez)AK024232 AK054666 AK225902 AK311630 BC007856
RefSeq transcript (Entrez)NM_002386
Consensus coding sequences : CCDS (NCBI)MC1R
Gene ExpressionMC1R [ NCBI-GEO ]   MC1R [ EBI - ARRAY_EXPRESS ]   MC1R [ SEEK ]   MC1R [ MEM ]
Gene Expression Viewer (FireBrowse)MC1R [ Firebrowse - Broad ]
GenevisibleExpression of MC1R in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4157
GTEX Portal (Tissue expression)MC1R
Human Protein AtlasENSG00000258839-MC1R [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MC1R
Human Protein Atlas [tissue]ENSG00000258839-MC1R [tissue]
HPRD01118
Protein Interaction databases
BioGRIDMC1R
STRING (EMBL)MC1R
ZODIACMC1R
Ontologies - Pathways
Litterature
PubMed352 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMC1R
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sun Jan 16 18:19:54 CET 2022
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