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MCTS1 (malignant T-cell amplified sequence 1)

Identity

Alias_namesmalignant T-cell amplified sequence 1
Alias_symbol (synonym)MCT-1
Other aliasMCT1
HGNC (Hugo) MCTS1
LocusID (NCBI) 28985
Atlas_Id 41324
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 119738552 and ends at 119755016 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MCTS1   23357
Cards
Entrez_Gene (NCBI)MCTS1  28985  malignant T-cell amplified sequence 1
AliasesMCT-1; MCT1
GeneCards (Weizmann)MCTS1
Ensembl hg19 (Hinxton)ENSG00000232119 [Gene_View]  chrX:119738552-119755016 [Contig_View]  MCTS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000232119 [Gene_View]  chrX:119738552-119755016 [Contig_View]  MCTS1 [Vega]
ICGC DataPortalENSG00000232119
TCGA cBioPortalMCTS1
AceView (NCBI)MCTS1
Genatlas (Paris)MCTS1
WikiGenes28985
SOURCE (Princeton)MCTS1
Genetics Home Reference (NIH)MCTS1
Genomic and cartography
GoldenPath hg19 (UCSC)MCTS1  -     chrX:119738552-119755016 +  Xq24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MCTS1  -     Xq24   [Description]    (hg38-Dec_2013)
EnsemblMCTS1 - Xq24 [CytoView hg19]  MCTS1 - Xq24 [CytoView hg38]
Mapping of homologs : NCBIMCTS1 [Mapview hg19]  MCTS1 [Mapview hg38]
OMIM300587   
Gene and transcription
Genbank (Entrez)AA375691 AB034206 AF456465 AK096956 AK294834
RefSeq transcript (Entrez)NM_001137554 NM_014060
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)MCTS1
Cluster EST : UnigeneHs.670803 [ NCBI ]
CGAP (NCI)Hs.670803
Alternative Splicing GalleryENSG00000232119
Gene ExpressionMCTS1 [ NCBI-GEO ]   MCTS1 [ EBI - ARRAY_EXPRESS ]   MCTS1 [ SEEK ]   MCTS1 [ MEM ]
Gene Expression Viewer (FireBrowse)MCTS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28985
GTEX Portal (Tissue expression)MCTS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULC4
Splice isoforms : SwissVarQ9ULC4
PhosPhoSitePlusQ9ULC4
Domaine pattern : Prosite (Expaxy)PUA (PS50890)   
Domains : Interpro (EBI)PUA    PUA-like_domain    Transl_RNA-bd_prd    Uncharacterised_CHP00451   
Domain families : Pfam (Sanger)PUA (PF01472)   
Domain families : Pfam (NCBI)pfam01472   
Domain families : Smart (EMBL)PUA (SM00359)  
Conserved Domain (NCBI)MCTS1
DMDM Disease mutations28985
Blocks (Seattle)MCTS1
PDB (SRS)3R90   
PDB (PDBSum)3R90   
PDB (IMB)3R90   
PDB (RSDB)3R90   
Structural Biology KnowledgeBase3R90   
SCOP (Structural Classification of Proteins)3R90   
CATH (Classification of proteins structures)3R90   
SuperfamilyQ9ULC4
Human Protein AtlasENSG00000232119
Peptide AtlasQ9ULC4
HPRD06634
IPIIPI00179026   IPI00900380   IPI00645446   IPI00169265   IPI00977119   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULC4
IntAct (EBI)Q9ULC4
FunCoupENSG00000232119
BioGRIDMCTS1
STRING (EMBL)MCTS1
ZODIACMCTS1
Ontologies - Pathways
QuickGOQ9ULC4
Ontology : AmiGOformation of translation preinitiation complex  IRES-dependent translational initiation  translation initiation factor activity  cytoplasm  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  cellular response to DNA damage stimulus  cell cycle  positive regulation of cell proliferation  cytosolic small ribosomal subunit  ribosome disassembly  regulation of growth  
Ontology : EGO-EBIformation of translation preinitiation complex  IRES-dependent translational initiation  translation initiation factor activity  cytoplasm  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  cellular response to DNA damage stimulus  cell cycle  positive regulation of cell proliferation  cytosolic small ribosomal subunit  ribosome disassembly  regulation of growth  
NDEx NetworkMCTS1
Atlas of Cancer Signalling NetworkMCTS1
Wikipedia pathwaysMCTS1
Orthology - Evolution
OrthoDB28985
GeneTree (enSembl)ENSG00000232119
Phylogenetic Trees/Animal Genes : TreeFamMCTS1
HOVERGENQ9ULC4
HOGENOMQ9ULC4
Homologs : HomoloGeneMCTS1
Homology/Alignments : Family Browser (UCSC)MCTS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMCTS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MCTS1
dbVarMCTS1
ClinVarMCTS1
1000_GenomesMCTS1 
Exome Variant ServerMCTS1
ExAC (Exome Aggregation Consortium)MCTS1 (select the gene name)
Genetic variants : HAPMAP28985
Genomic Variants (DGV)MCTS1 [DGVbeta]
DECIPHER (Syndromes)X:119738552-119755016  ENSG00000232119
CONAN: Copy Number AnalysisMCTS1 
Mutations
ICGC Data PortalMCTS1 
TCGA Data PortalMCTS1 
Broad Tumor PortalMCTS1
OASIS PortalMCTS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMCTS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMCTS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MCTS1
DgiDB (Drug Gene Interaction Database)MCTS1
DoCM (Curated mutations)MCTS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MCTS1 (select a term)
intoGenMCTS1
Cancer3DMCTS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300587   
Orphanet
MedgenMCTS1
Genetic Testing Registry MCTS1
NextProtQ9ULC4 [Medical]
TSGene28985
GENETestsMCTS1
Huge Navigator MCTS1 [HugePedia]
snp3D : Map Gene to Disease28985
BioCentury BCIQMCTS1
ClinGenMCTS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28985
Chemical/Pharm GKB GenePA128394649
Clinical trialMCTS1
Miscellaneous
canSAR (ICR)MCTS1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMCTS1
EVEXMCTS1
GoPubMedMCTS1
iHOPMCTS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:14:47 CET 2017

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