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MDC1-AS1 (MDC1 antisense RNA 1)

Identity

Other aliasMDC1-AS
HGNC (Hugo) MDC1-AS1
LocusID (NCBI) 106478956
Atlas_Id 56833
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 30703067 and ends at 30713184 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MDC1-AS1   39764
Cards
Entrez_Gene (NCBI)MDC1-AS1  106478956  MDC1 antisense RNA 1
AliasesMDC1-AS
GeneCards (Weizmann)MDC1-AS1
Ensembl hg19 (Hinxton)ENSG00000224328 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224328 [Gene_View]  ENSG00000224328 [Sequence]  chr6:30703067-30713184 [Contig_View]  MDC1-AS1 [Vega]
ICGC DataPortalENSG00000224328
TCGA cBioPortalMDC1-AS1
AceView (NCBI)MDC1-AS1
Genatlas (Paris)MDC1-AS1
WikiGenes106478956
SOURCE (Princeton)MDC1-AS1
Genetics Home Reference (NIH)MDC1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)MDC1-AS1  -     chr6:30703067-30713184 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MDC1-AS1  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblMDC1-AS1 - 6p21.33 [CytoView hg19]  MDC1-AS1 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIMDC1-AS1 [Mapview hg19]  MDC1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ575709
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)MDC1-AS1
Cluster EST : UnigeneHs.708954 [ NCBI ]
CGAP (NCI)Hs.708954
Alternative Splicing GalleryENSG00000224328
Gene ExpressionMDC1-AS1 [ NCBI-GEO ]   MDC1-AS1 [ EBI - ARRAY_EXPRESS ]   MDC1-AS1 [ SEEK ]   MDC1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)MDC1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)106478956
GTEX Portal (Tissue expression)MDC1-AS1
Human Protein AtlasENSG00000224328-MDC1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MDC1-AS1
DMDM Disease mutations106478956
Blocks (Seattle)MDC1-AS1
Human Protein Atlas [tissue]ENSG00000224328-MDC1-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000224328
BioGRIDMDC1-AS1
STRING (EMBL)MDC1-AS1
ZODIACMDC1-AS1
Ontologies - Pathways
Huge Navigator MDC1-AS1 [HugePedia]
snp3D : Map Gene to Disease106478956
BioCentury BCIQMDC1-AS1
ClinGenMDC1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD106478956
Clinical trialMDC1-AS1
Miscellaneous
canSAR (ICR)MDC1-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMDC1-AS1
EVEXMDC1-AS1
GoPubMedMDC1-AS1
iHOPMDC1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 6 11:19:24 CET 2018

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