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MDFI (MyoD family inhibitor)

Identity

Alias_symbol (synonym)I-mfa
Other aliasI-MF
HGNC (Hugo) MDFI
LocusID (NCBI) 4188
Atlas_Id 52596
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 41638457 and ends at 41654244 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNM2 (19p13.2) / MDFI (6p21.1)MDFI (6p21.1) / KIF3C (2p23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MDFI   6967
Cards
Entrez_Gene (NCBI)MDFI  4188  MyoD family inhibitor
AliasesI-MF; I-mfa
GeneCards (Weizmann)MDFI
Ensembl hg19 (Hinxton)ENSG00000112559 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112559 [Gene_View]  ENSG00000112559 [Sequence]  chr6:41638457-41654244 [Contig_View]  MDFI [Vega]
ICGC DataPortalENSG00000112559
TCGA cBioPortalMDFI
AceView (NCBI)MDFI
Genatlas (Paris)MDFI
WikiGenes4188
SOURCE (Princeton)MDFI
Genetics Home Reference (NIH)MDFI
Genomic and cartography
GoldenPath hg38 (UCSC)MDFI  -     chr6:41638457-41654244 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MDFI  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblMDFI - 6p21.1 [CytoView hg19]  MDFI - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBIMDFI [Mapview hg19]  MDFI [Mapview hg38]
OMIM604971   
Gene and transcription
Genbank (Entrez)AK290735 BC007836 BG818571 BI824391 BJ989485
RefSeq transcript (Entrez)NM_001300804 NM_001300805 NM_001300806 NM_005586
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MDFI
Cluster EST : UnigeneHs.520119 [ NCBI ]
CGAP (NCI)Hs.520119
Alternative Splicing GalleryENSG00000112559
Gene ExpressionMDFI [ NCBI-GEO ]   MDFI [ EBI - ARRAY_EXPRESS ]   MDFI [ SEEK ]   MDFI [ MEM ]
Gene Expression Viewer (FireBrowse)MDFI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4188
GTEX Portal (Tissue expression)MDFI
Human Protein AtlasENSG00000112559-MDFI [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99750   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99750  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99750
Splice isoforms : SwissVarQ99750
PhosPhoSitePlusQ99750
Domains : Interpro (EBI)MDFI/MDFIC   
Domain families : Pfam (Sanger)MDFI (PF15316)   
Domain families : Pfam (NCBI)pfam15316   
Conserved Domain (NCBI)MDFI
DMDM Disease mutations4188
Blocks (Seattle)MDFI
SuperfamilyQ99750
Human Protein Atlas [tissue]ENSG00000112559-MDFI [tissue]
Peptide AtlasQ99750
HPRD07280
IPIIPI00023726   IPI00385435   IPI00645079   IPI00852743   IPI00852666   IPI00852583   IPI00853531   
Protein Interaction databases
DIP (DOE-UCLA)Q99750
IntAct (EBI)Q99750
FunCoupENSG00000112559
BioGRIDMDFI
STRING (EMBL)MDFI
ZODIACMDFI
Ontologies - Pathways
QuickGOQ99750
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  protein binding  nucleus  nucleus  cytoplasm  transcription factor binding  dorsal/ventral axis specification  negative regulation of Wnt signaling pathway  identical protein binding  cytoplasmic sequestering of transcription factor  negative regulation of DNA binding  embryonic skeletal system morphogenesis  trophoblast giant cell differentiation  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  protein binding  nucleus  nucleus  cytoplasm  transcription factor binding  dorsal/ventral axis specification  negative regulation of Wnt signaling pathway  identical protein binding  cytoplasmic sequestering of transcription factor  negative regulation of DNA binding  embryonic skeletal system morphogenesis  trophoblast giant cell differentiation  
NDEx NetworkMDFI
Atlas of Cancer Signalling NetworkMDFI
Wikipedia pathwaysMDFI
Orthology - Evolution
OrthoDB4188
GeneTree (enSembl)ENSG00000112559
Phylogenetic Trees/Animal Genes : TreeFamMDFI
HOVERGENQ99750
HOGENOMQ99750
Homologs : HomoloGeneMDFI
Homology/Alignments : Family Browser (UCSC)MDFI
Gene fusions - Rearrangements
Fusion : QuiverMDFI
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMDFI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MDFI
dbVarMDFI
ClinVarMDFI
1000_GenomesMDFI 
Exome Variant ServerMDFI
ExAC (Exome Aggregation Consortium)ENSG00000112559
GNOMAD BrowserENSG00000112559
Varsome BrowserMDFI
Genetic variants : HAPMAP4188
Genomic Variants (DGV)MDFI [DGVbeta]
DECIPHERMDFI [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMDFI 
Mutations
ICGC Data PortalMDFI 
TCGA Data PortalMDFI 
Broad Tumor PortalMDFI
OASIS PortalMDFI [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMDFI  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMDFI
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MDFI
DgiDB (Drug Gene Interaction Database)MDFI
DoCM (Curated mutations)MDFI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MDFI (select a term)
intoGenMDFI
Cancer3DMDFI(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604971   
Orphanet
DisGeNETMDFI
MedgenMDFI
Genetic Testing Registry MDFI
NextProtQ99750 [Medical]
TSGene4188
GENETestsMDFI
Target ValidationMDFI
Huge Navigator MDFI [HugePedia]
snp3D : Map Gene to Disease4188
BioCentury BCIQMDFI
ClinGenMDFI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4188
Chemical/Pharm GKB GenePA30713
Clinical trialMDFI
Miscellaneous
canSAR (ICR)MDFI (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMDFI
EVEXMDFI
GoPubMedMDFI
iHOPMDFI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:19:25 CET 2018

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