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MDN1 (midasin AAA ATPase 1)

Identity

Alias_namesMDN1, midasin homolog (yeast)
Alias_symbol (synonym)KIAA0301
Rea1
Other alias
HGNC (Hugo) MDN1
LocusID (NCBI) 23195
Atlas_Id 68864
Location 6q15  [Link to chromosome band 6q15]
Location_base_pair Starts at 89642775 and ends at 89819794 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MDN1 (6q15) / CYB5R4 (6q14.2)MDN1 (6q15) / MDN1 (6q15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q14;q15) MDN1/CYB5R4


External links

Nomenclature
HGNC (Hugo)MDN1   18302
Cards
Entrez_Gene (NCBI)MDN1  23195  midasin AAA ATPase 1
AliasesRea1
GeneCards (Weizmann)MDN1
Ensembl hg19 (Hinxton)ENSG00000112159 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112159 [Gene_View]  ENSG00000112159 [Sequence]  chr6:89642775-89819794 [Contig_View]  MDN1 [Vega]
ICGC DataPortalENSG00000112159
TCGA cBioPortalMDN1
AceView (NCBI)MDN1
Genatlas (Paris)MDN1
WikiGenes23195
SOURCE (Princeton)MDN1
Genetics Home Reference (NIH)MDN1
Genomic and cartography
GoldenPath hg38 (UCSC)MDN1  -     chr6:89642775-89819794 -  6q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MDN1  -     6q15   [Description]    (hg19-Feb_2009)
EnsemblMDN1 - 6q15 [CytoView hg19]  MDN1 - 6q15 [CytoView hg38]
Mapping of homologs : NCBIMDN1 [Mapview hg19]  MDN1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB002299 AF503925 AK027048 AK098453 AK123109
RefSeq transcript (Entrez)NM_014611
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MDN1
Cluster EST : UnigeneHs.529948 [ NCBI ]
CGAP (NCI)Hs.529948
Alternative Splicing GalleryENSG00000112159
Gene ExpressionMDN1 [ NCBI-GEO ]   MDN1 [ EBI - ARRAY_EXPRESS ]   MDN1 [ SEEK ]   MDN1 [ MEM ]
Gene Expression Viewer (FireBrowse)MDN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23195
GTEX Portal (Tissue expression)MDN1
Human Protein AtlasENSG00000112159-MDN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NU22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NU22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NU22
Splice isoforms : SwissVarQ9NU22
PhosPhoSitePlusQ9NU22
Domaine pattern : Prosite (Expaxy)VWFA (PS50234)   
Domains : Interpro (EBI)AAA+_ATPase    ATPase_dyneun-rel_AAA    P-loop_NTPase    VWF_A   
Domain families : Pfam (Sanger)AAA_5 (PF07728)   
Domain families : Pfam (NCBI)pfam07728   
Domain families : Smart (EMBL)AAA (SM00382)  VWA (SM00327)  
Conserved Domain (NCBI)MDN1
DMDM Disease mutations23195
Blocks (Seattle)MDN1
SuperfamilyQ9NU22
Human Protein Atlas [tissue]ENSG00000112159-MDN1 [tissue]
Peptide AtlasQ9NU22
HPRD10069
IPIIPI00167941   IPI00446473   IPI00514014   
Protein Interaction databases
DIP (DOE-UCLA)Q9NU22
IntAct (EBI)Q9NU22
FunCoupENSG00000112159
BioGRIDMDN1
STRING (EMBL)MDN1
ZODIACMDN1
Ontologies - Pathways
QuickGOQ9NU22
Ontology : AmiGO###############################################################################################################################################################################################################################################################                            
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                            
NDEx NetworkMDN1
Atlas of Cancer Signalling NetworkMDN1
Wikipedia pathwaysMDN1
Orthology - Evolution
OrthoDB23195
GeneTree (enSembl)ENSG00000112159
Phylogenetic Trees/Animal Genes : TreeFamMDN1
HOVERGENQ9NU22
HOGENOMQ9NU22
Homologs : HomoloGeneMDN1
Homology/Alignments : Family Browser (UCSC)MDN1
Gene fusions - Rearrangements
Fusion : QuiverMDN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMDN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MDN1
dbVarMDN1
ClinVarMDN1
1000_GenomesMDN1 
Exome Variant ServerMDN1
ExAC (Exome Aggregation Consortium)ENSG00000112159
GNOMAD BrowserENSG00000112159
Varsome BrowserMDN1
Genetic variants : HAPMAP23195
Genomic Variants (DGV)MDN1 [DGVbeta]
DECIPHERMDN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMDN1 
Mutations
ICGC Data PortalMDN1 
TCGA Data PortalMDN1 
Broad Tumor PortalMDN1
OASIS PortalMDN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMDN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMDN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MDN1
DgiDB (Drug Gene Interaction Database)MDN1
DoCM (Curated mutations)MDN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MDN1 (select a term)
intoGenMDN1
Cancer3DMDN1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMDN1
MedgenMDN1
Genetic Testing Registry MDN1
NextProtQ9NU22 [Medical]
TSGene23195
GENETestsMDN1
Target ValidationMDN1
Huge Navigator MDN1 [HugePedia]
snp3D : Map Gene to Disease23195
BioCentury BCIQMDN1
ClinGenMDN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23195
Chemical/Pharm GKB GenePA30720
Clinical trialMDN1
Miscellaneous
canSAR (ICR)MDN1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMDN1
EVEXMDN1
GoPubMedMDN1
iHOPMDN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:12:31 CEST 2018

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