Atlas of Genetics and Cytogenetics in Oncology and Haematology

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MED21 (mediator complex subunit 21)

Identity

Other namesSRB7
SURB7
hSrb7
HGNC (Hugo) MED21
LocusID (NCBI) 9412
Location 12p11.23
Location_base_pair Starts at 27175455 and ends at 27183606 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MED21   11473
Entrez_Gene (NCBI)MED21  9412  mediator complex subunit 21
Cards
GeneCards (Weizmann)MED21
Ensembl (Hinxton)ENSG00000152944 [Gene_View]  chr12:27175455-27183606 [Contig_View]  MED21 [Vega]
AceView (NCBI)MED21
Genatlas (Paris)MED21
SOURCE (Stanford)NM_001271811 NM_004264
Genomic and cartography
GoldenPath (UCSC)MED21  -  12p11.23   chr12:27175455-27183606 +  12p11.23   [Description]    (hg19-Feb_2009)
EnsemblMED21 - 12p11.23 [CytoView]
Mapping of homologs : NCBIMED21 [Mapview]
OMIM603800   
Gene and transcription
Genbank (Entrez)AK309064 AK311838 BC008380 CR456999 DA420057
RefSeq transcript (SRS)NM_001271811 NM_004264
RefSeq transcript (Entrez)NM_001271811 NM_004264
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_009714 NW_001838052 NW_004078074
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_009714 NW_001838052 NW_004078074
Consensus coding sequences : CCDS (NCBI)MED21
Cluster EST : UnigeneHs.286145 [ SRS ] Hs.286145 [ NCBI ]
CGAP (NCI)Hs.286145
Alternative Splicing : Fast-db (Paris)GSHG0006552
Alternative Splicing GalleryENSG00000152944
Gene ExpressionMED21 [ NCBI-GEO ]   MED21 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13503 (SRS) Q13503 (Uniprot)
NextProtQ13503
With graphics : InterProQ13503
Splice isoforms : SwissVarQ13503(Swissvar)
Domains : Interpro (SRS)Mediator_Med21   
Domains : Interpro (EBI)Mediator_Med21   
Related proteins : CluSTrQ13503
Domain families : Pfam (SRS)Med21 (PF11221)   
Domain families : Pfam (Sanger)Med21 (PF11221)   
Domain families : Pfam (NCBI)pfam11221   
DMDM9412
Blocks (Seattle)Q13503
Human Protein AtlasENSG00000152944
HPRD09156
IPIIPI00013677   IPI01015167   IPI01013550   
Protein Interaction databases
DIP (DOE-UCLA)Q13503
IntAct (EBI)Q13503
FunCoupENSG00000152944
REACTOMEMED21
Protein Interaction Database9412
BioGRIDMED21
InParanoidQ13503
Interologous Interaction database Q13503
IntegromeDBMED21
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)MED21
SNP (GeneSNP Utah)MED21
SNP : HGBaseMED21
Genetic variants : HAPMAPMED21
Somatic Mutations in Cancer : COSMICMED21 
CONAN: Copy Number AnalysisMED21 
Mutations and Diseases : HGMDMED21
OMIM603800   
GENETests603800   
Disease Genetic AssociationMED21
Huge Navigator MED21 [HugePedia]  MED21 [HugeCancerGEM]
Genomic VariantsMED21  MED21 [DGVbeta]
ClinVarMED21
snp3D : Map Gene to Disease9412
General knowledge
Homologs : HomoloGeneMED21
Homology/Alignments : Family Browser (UCSC)MED21
Phylogenetic Trees/Animal Genes : TreeFamMED21
Chemical/Protein Interactions : CTD9412
Chemical/Pharm GKB GenePA162395485
Clinical trialMED21
Cancer Resource (Charite)ENSG00000152944
Ontology : AmiGOblastocyst development  transcription coactivator activity  DNA-directed RNA polymerase activity  transcription, DNA-dependent  regulation of transcription from RNA polymerase II promoter  mediator complex  stem cell maintenance  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIblastocyst development  transcription coactivator activity  DNA-directed RNA polymerase activity  transcription, DNA-dependent  regulation of transcription from RNA polymerase II promoter  mediator complex  stem cell maintenance  positive regulation of transcription from RNA polymerase II promoter  
Other databases
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
PubGeneMED21
iHOPMED21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:29:14 CEST 2013
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