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MED29 (mediator complex subunit 29)

Identity

Alias_namesIXL
intersex-like (Drosophila)
Alias_symbol (synonym)DKFZp434H247
MED2
Other alias
HGNC (Hugo) MED29
LocusID (NCBI) 55588
Atlas_Id 47610
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39391303 and ends at 39400637 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MED29 (19q13.2) / SAMD4B (19q13.2)MED29 19q13.2 / SAMD4B 19q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MED29   23074
Cards
Entrez_Gene (NCBI)MED29  55588  mediator complex subunit 29
AliasesIXL; MED2
GeneCards (Weizmann)MED29
Ensembl hg19 (Hinxton)ENSG00000063322 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000063322 [Gene_View]  chr19:39391303-39400637 [Contig_View]  MED29 [Vega]
ICGC DataPortalENSG00000063322
TCGA cBioPortalMED29
AceView (NCBI)MED29
Genatlas (Paris)MED29
WikiGenes55588
SOURCE (Princeton)MED29
Genetics Home Reference (NIH)MED29
Genomic and cartography
GoldenPath hg38 (UCSC)MED29  -     chr19:39391303-39400637 +  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MED29  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblMED29 - 19q13.2 [CytoView hg19]  MED29 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIMED29 [Mapview hg19]  MED29 [Mapview hg38]
OMIM612914   
Gene and transcription
Genbank (Entrez)AK000411 AK026527 AK090877 AK092909 AK124629
RefSeq transcript (Entrez)NM_001317770 NM_017592
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MED29
Cluster EST : UnigeneHs.611541 [ NCBI ]
CGAP (NCI)Hs.611541
Alternative Splicing GalleryENSG00000063322
Gene ExpressionMED29 [ NCBI-GEO ]   MED29 [ EBI - ARRAY_EXPRESS ]   MED29 [ SEEK ]   MED29 [ MEM ]
Gene Expression Viewer (FireBrowse)MED29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55588
GTEX Portal (Tissue expression)MED29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX70
Splice isoforms : SwissVarQ9NX70
PhosPhoSitePlusQ9NX70
Domains : Interpro (EBI)Mediator_Med29_met   
Domain families : Pfam (Sanger)Med29 (PF11568)   
Domain families : Pfam (NCBI)pfam11568   
Conserved Domain (NCBI)MED29
DMDM Disease mutations55588
Blocks (Seattle)MED29
SuperfamilyQ9NX70
Human Protein AtlasENSG00000063322
Peptide AtlasQ9NX70
HPRD13748
IPIIPI01015197   IPI00909420   IPI00032780   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX70
IntAct (EBI)Q9NX70
FunCoupENSG00000063322
BioGRIDMED29
STRING (EMBL)MED29
ZODIACMED29
Ontologies - Pathways
QuickGOQ9NX70
Ontology : AmiGOprotein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  mediator complex  
Ontology : EGO-EBIprotein binding  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  mediator complex  
NDEx NetworkMED29
Atlas of Cancer Signalling NetworkMED29
Wikipedia pathwaysMED29
Orthology - Evolution
OrthoDB55588
GeneTree (enSembl)ENSG00000063322
Phylogenetic Trees/Animal Genes : TreeFamMED29
HOVERGENQ9NX70
HOGENOMQ9NX70
Homologs : HomoloGeneMED29
Homology/Alignments : Family Browser (UCSC)MED29
Gene fusions - Rearrangements
Fusion : MitelmanMED29/SAMD4B [19q13.2/19q13.2]  
Fusion: TCGAMED29 19q13.2 SAMD4B 19q13.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMED29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MED29
dbVarMED29
ClinVarMED29
1000_GenomesMED29 
Exome Variant ServerMED29
ExAC (Exome Aggregation Consortium)MED29 (select the gene name)
Genetic variants : HAPMAP55588
Genomic Variants (DGV)MED29 [DGVbeta]
DECIPHERMED29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMED29 
Mutations
ICGC Data PortalMED29 
TCGA Data PortalMED29 
Broad Tumor PortalMED29
OASIS PortalMED29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMED29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMED29
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch MED29
DgiDB (Drug Gene Interaction Database)MED29
DoCM (Curated mutations)MED29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MED29 (select a term)
intoGenMED29
Cancer3DMED29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612914   
Orphanet
MedgenMED29
Genetic Testing Registry MED29
NextProtQ9NX70 [Medical]
TSGene55588
GENETestsMED29
Target ValidationMED29
Huge Navigator MED29 [HugePedia]
snp3D : Map Gene to Disease55588
BioCentury BCIQMED29
ClinGenMED29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55588
Chemical/Pharm GKB GenePA162395655
Clinical trialMED29
Miscellaneous
canSAR (ICR)MED29 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMED29
EVEXMED29
GoPubMedMED29
iHOPMED29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:42:43 CEST 2017

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