Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MED7 (mediator complex subunit 7)

Identity

Alias_namesCRSP9
cofactor required for Sp1 transcriptional activation, subunit 9, 33kDa
Alias_symbol (synonym)CRSP33
Other aliasARC34
HGNC (Hugo) MED7
LocusID (NCBI) 9443
Atlas_Id 68885
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 157138440 and ends at 157142775 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MED7   2378
Cards
Entrez_Gene (NCBI)MED7  9443  mediator complex subunit 7
AliasesARC34; CRSP33; CRSP9
GeneCards (Weizmann)MED7
Ensembl hg19 (Hinxton)ENSG00000155868 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155868 [Gene_View]  chr5:157138440-157142775 [Contig_View]  MED7 [Vega]
ICGC DataPortalENSG00000155868
TCGA cBioPortalMED7
AceView (NCBI)MED7
Genatlas (Paris)MED7
WikiGenes9443
SOURCE (Princeton)MED7
Genetics Home Reference (NIH)MED7
Genomic and cartography
GoldenPath hg38 (UCSC)MED7  -     chr5:157138440-157142775 -  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MED7  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblMED7 - 5q33.3 [CytoView hg19]  MED7 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBIMED7 [Mapview hg19]  MED7 [Mapview hg38]
OMIM605045   
Gene and transcription
Genbank (Entrez)AF031383 AF104251 AK308393 AV711090 BC005250
RefSeq transcript (Entrez)NM_001100816 NM_004270
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MED7
Cluster EST : UnigeneHs.744244 [ NCBI ]
CGAP (NCI)Hs.744244
Alternative Splicing GalleryENSG00000155868
Gene ExpressionMED7 [ NCBI-GEO ]   MED7 [ EBI - ARRAY_EXPRESS ]   MED7 [ SEEK ]   MED7 [ MEM ]
Gene Expression Viewer (FireBrowse)MED7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9443
GTEX Portal (Tissue expression)MED7
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43513   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43513  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43513
Splice isoforms : SwissVarO43513
PhosPhoSitePlusO43513
Domains : Interpro (EBI)Mediatior_Med7   
Domain families : Pfam (Sanger)Med7 (PF05983)   
Domain families : Pfam (NCBI)pfam05983   
Conserved Domain (NCBI)MED7
DMDM Disease mutations9443
Blocks (Seattle)MED7
SuperfamilyO43513
Human Protein AtlasENSG00000155868
Peptide AtlasO43513
HPRD05439
IPIIPI00003562   IPI00983293   
Protein Interaction databases
DIP (DOE-UCLA)O43513
IntAct (EBI)O43513
FunCoupENSG00000155868
BioGRIDMED7
STRING (EMBL)MED7
ZODIACMED7
Ontologies - Pathways
QuickGOO43513
Ontology : AmiGOubiquitin ligase complex  RNA polymerase II transcription cofactor activity  transcription coactivator activity  protein binding  nucleoplasm  transcription factor complex  regulation of transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  protein ubiquitination  mediator complex  nuclear body  stem cell population maintenance  ubiquitin protein ligase activity  
Ontology : EGO-EBIubiquitin ligase complex  RNA polymerase II transcription cofactor activity  transcription coactivator activity  protein binding  nucleoplasm  transcription factor complex  regulation of transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  protein ubiquitination  mediator complex  nuclear body  stem cell population maintenance  ubiquitin protein ligase activity  
NDEx NetworkMED7
Atlas of Cancer Signalling NetworkMED7
Wikipedia pathwaysMED7
Orthology - Evolution
OrthoDB9443
GeneTree (enSembl)ENSG00000155868
Phylogenetic Trees/Animal Genes : TreeFamMED7
HOVERGENO43513
HOGENOMO43513
Homologs : HomoloGeneMED7
Homology/Alignments : Family Browser (UCSC)MED7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMED7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MED7
dbVarMED7
ClinVarMED7
1000_GenomesMED7 
Exome Variant ServerMED7
ExAC (Exome Aggregation Consortium)MED7 (select the gene name)
Genetic variants : HAPMAP9443
Genomic Variants (DGV)MED7 [DGVbeta]
DECIPHERMED7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMED7 
Mutations
ICGC Data PortalMED7 
TCGA Data PortalMED7 
Broad Tumor PortalMED7
OASIS PortalMED7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMED7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMED7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MED7
DgiDB (Drug Gene Interaction Database)MED7
DoCM (Curated mutations)MED7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MED7 (select a term)
intoGenMED7
Cancer3DMED7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605045   
Orphanet
MedgenMED7
Genetic Testing Registry MED7
NextProtO43513 [Medical]
TSGene9443
GENETestsMED7
Target ValidationMED7
Huge Navigator MED7 [HugePedia]
snp3D : Map Gene to Disease9443
BioCentury BCIQMED7
ClinGenMED7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9443
Chemical/Pharm GKB GenePA162395669
Clinical trialMED7
Miscellaneous
canSAR (ICR)MED7 (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMED7
EVEXMED7
GoPubMedMED7
iHOPMED7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:25:48 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.