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MED9 (mediator complex subunit 9)

Identity

Alias_namesmediator of RNA polymerase II transcription, subunit 9 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ10193
MED25
Other alias
HGNC (Hugo) MED9
LocusID (NCBI) 55090
Atlas_Id 68887
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 17380300 and ends at 17396534 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MED9 (17p11.2) / NUP210L (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MED9   25487
Cards
Entrez_Gene (NCBI)MED9  55090  mediator complex subunit 9
AliasesMED25
GeneCards (Weizmann)MED9
Ensembl hg19 (Hinxton)ENSG00000141026 [Gene_View]  chr17:17380300-17396534 [Contig_View]  MED9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000141026 [Gene_View]  chr17:17380300-17396534 [Contig_View]  MED9 [Vega]
ICGC DataPortalENSG00000141026
TCGA cBioPortalMED9
AceView (NCBI)MED9
Genatlas (Paris)MED9
WikiGenes55090
SOURCE (Princeton)MED9
Genetics Home Reference (NIH)MED9
Genomic and cartography
GoldenPath hg19 (UCSC)MED9  -     chr17:17380300-17396534 +  17p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MED9  -     17p11.2   [Description]    (hg38-Dec_2013)
EnsemblMED9 - 17p11.2 [CytoView hg19]  MED9 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIMED9 [Mapview hg19]  MED9 [Mapview hg38]
OMIM609878   
Gene and transcription
Genbank (Entrez)AK001055 BC000647 BC010906 BC104988 BC112029
RefSeq transcript (Entrez)NM_018019
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)MED9
Cluster EST : UnigeneHs.244595 [ NCBI ]
CGAP (NCI)Hs.244595
Alternative Splicing GalleryENSG00000141026
Gene ExpressionMED9 [ NCBI-GEO ]   MED9 [ EBI - ARRAY_EXPRESS ]   MED9 [ SEEK ]   MED9 [ MEM ]
Gene Expression Viewer (FireBrowse)MED9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55090
GTEX Portal (Tissue expression)MED9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWA0
Splice isoforms : SwissVarQ9NWA0
PhosPhoSitePlusQ9NWA0
Domains : Interpro (EBI)Mediator_Med9   
Domain families : Pfam (Sanger)Med9 (PF07544)   
Domain families : Pfam (NCBI)pfam07544   
Conserved Domain (NCBI)MED9
DMDM Disease mutations55090
Blocks (Seattle)MED9
SuperfamilyQ9NWA0
Human Protein AtlasENSG00000141026
Peptide AtlasQ9NWA0
HPRD14383
IPIIPI00017552   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWA0
IntAct (EBI)Q9NWA0
FunCoupENSG00000141026
BioGRIDMED9
STRING (EMBL)MED9
ZODIACMED9
Ontologies - Pathways
QuickGOQ9NWA0
Ontology : AmiGORNA polymerase II transcription cofactor activity  protein binding  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  mediator complex  
Ontology : EGO-EBIRNA polymerase II transcription cofactor activity  protein binding  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  mediator complex  
NDEx NetworkMED9
Atlas of Cancer Signalling NetworkMED9
Wikipedia pathwaysMED9
Orthology - Evolution
OrthoDB55090
GeneTree (enSembl)ENSG00000141026
Phylogenetic Trees/Animal Genes : TreeFamMED9
HOVERGENQ9NWA0
HOGENOMQ9NWA0
Homologs : HomoloGeneMED9
Homology/Alignments : Family Browser (UCSC)MED9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMED9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MED9
dbVarMED9
ClinVarMED9
1000_GenomesMED9 
Exome Variant ServerMED9
ExAC (Exome Aggregation Consortium)MED9 (select the gene name)
Genetic variants : HAPMAP55090
Genomic Variants (DGV)MED9 [DGVbeta]
DECIPHER (Syndromes)17:17380300-17396534  ENSG00000141026
CONAN: Copy Number AnalysisMED9 
Mutations
ICGC Data PortalMED9 
TCGA Data PortalMED9 
Broad Tumor PortalMED9
OASIS PortalMED9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMED9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMED9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MED9
DgiDB (Drug Gene Interaction Database)MED9
DoCM (Curated mutations)MED9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MED9 (select a term)
intoGenMED9
Cancer3DMED9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609878   
Orphanet
MedgenMED9
Genetic Testing Registry MED9
NextProtQ9NWA0 [Medical]
TSGene55090
GENETestsMED9
Huge Navigator MED9 [HugePedia]
snp3D : Map Gene to Disease55090
BioCentury BCIQMED9
ClinGenMED9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55090
Chemical/Pharm GKB GenePA134925396
Clinical trialMED9
Miscellaneous
canSAR (ICR)MED9 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMED9
EVEXMED9
GoPubMedMED9
iHOPMED9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:27:59 CET 2017

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