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MEDAG (mesenteric estrogen dependent adipogenesis)

Identity

Alias_namesC13orf33
chromosome 13 open reading frame 33
mesenteric estrogen-dependent adipogenesis
Alias_symbol (synonym)FLJ14834
AWMS3
MEDA-4
Other aliasMEDA4
hAWMS3
HGNC (Hugo) MEDAG
LocusID (NCBI) 84935
Atlas_Id 68888
Location 13q12.3  [Link to chromosome band 13q12]
Location_base_pair Starts at 30906175 and ends at 30925572 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LINC00545 (13q12.3) / MEDAG (13q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MEDAG   25926
Cards
Entrez_Gene (NCBI)MEDAG  84935  mesenteric estrogen dependent adipogenesis
AliasesAWMS3; C13orf33; MEDA-4; MEDA4; 
hAWMS3
GeneCards (Weizmann)MEDAG
Ensembl hg19 (Hinxton)ENSG00000102802 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102802 [Gene_View]  chr13:30906175-30925572 [Contig_View]  MEDAG [Vega]
ICGC DataPortalENSG00000102802
TCGA cBioPortalMEDAG
AceView (NCBI)MEDAG
Genatlas (Paris)MEDAG
WikiGenes84935
SOURCE (Princeton)MEDAG
Genetics Home Reference (NIH)MEDAG
Genomic and cartography
GoldenPath hg38 (UCSC)MEDAG  -     chr13:30906175-30925572 +  13q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEDAG  -     13q12.3   [Description]    (hg19-Feb_2009)
EnsemblMEDAG - 13q12.3 [CytoView hg19]  MEDAG - 13q12.3 [CytoView hg38]
Mapping of homologs : NCBIMEDAG [Mapview hg19]  MEDAG [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB055407 AK027740 AK055635 BC040165 BC101624
RefSeq transcript (Entrez)NM_032849
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEDAG
Cluster EST : UnigeneHs.708377 [ NCBI ]
CGAP (NCI)Hs.708377
Alternative Splicing GalleryENSG00000102802
Gene ExpressionMEDAG [ NCBI-GEO ]   MEDAG [ EBI - ARRAY_EXPRESS ]   MEDAG [ SEEK ]   MEDAG [ MEM ]
Gene Expression Viewer (FireBrowse)MEDAG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84935
GTEX Portal (Tissue expression)MEDAG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VYS4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VYS4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VYS4
Splice isoforms : SwissVarQ5VYS4
PhosPhoSitePlusQ5VYS4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MEDAG
DMDM Disease mutations84935
Blocks (Seattle)MEDAG
SuperfamilyQ5VYS4
Human Protein AtlasENSG00000102802
Peptide AtlasQ5VYS4
HPRD07872
IPIIPI00043587   IPI00827969   IPI00647204   
Protein Interaction databases
DIP (DOE-UCLA)Q5VYS4
IntAct (EBI)Q5VYS4
FunCoupENSG00000102802
BioGRIDMEDAG
STRING (EMBL)MEDAG
ZODIACMEDAG
Ontologies - Pathways
QuickGOQ5VYS4
Ontology : AmiGOcytoplasm  positive regulation of fat cell differentiation  
Ontology : EGO-EBIcytoplasm  positive regulation of fat cell differentiation  
NDEx NetworkMEDAG
Atlas of Cancer Signalling NetworkMEDAG
Wikipedia pathwaysMEDAG
Orthology - Evolution
OrthoDB84935
GeneTree (enSembl)ENSG00000102802
Phylogenetic Trees/Animal Genes : TreeFamMEDAG
HOVERGENQ5VYS4
HOGENOMQ5VYS4
Homologs : HomoloGeneMEDAG
Homology/Alignments : Family Browser (UCSC)MEDAG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEDAG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEDAG
dbVarMEDAG
ClinVarMEDAG
1000_GenomesMEDAG 
Exome Variant ServerMEDAG
ExAC (Exome Aggregation Consortium)MEDAG (select the gene name)
Genetic variants : HAPMAP84935
Genomic Variants (DGV)MEDAG [DGVbeta]
DECIPHERMEDAG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEDAG 
Mutations
ICGC Data PortalMEDAG 
TCGA Data PortalMEDAG 
Broad Tumor PortalMEDAG
OASIS PortalMEDAG [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMEDAG
BioMutasearch MEDAG
DgiDB (Drug Gene Interaction Database)MEDAG
DoCM (Curated mutations)MEDAG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEDAG (select a term)
intoGenMEDAG
Cancer3DMEDAG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMEDAG
Genetic Testing Registry MEDAG
NextProtQ5VYS4 [Medical]
TSGene84935
GENETestsMEDAG
Target ValidationMEDAG
Huge Navigator MEDAG [HugePedia]
snp3D : Map Gene to Disease84935
BioCentury BCIQMEDAG
ClinGenMEDAG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84935
Chemical/Pharm GKB GenePA147358556
Clinical trialMEDAG
Miscellaneous
canSAR (ICR)MEDAG (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMEDAG
EVEXMEDAG
GoPubMedMEDAG
iHOPMEDAG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:27:08 CEST 2017

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