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MEGF10 (multiple EGF like domains 10)

Identity

Alias_namesmultiple EGF-like-domains 10
Alias_symbol (synonym)KIAA1780
Other aliasEMARDD
HGNC (Hugo) MEGF10
LocusID (NCBI) 84466
Atlas_Id 56460
Location 5q23.2  [Link to chromosome band 5q23]
Location_base_pair Starts at 126626456 and ends at 126796910 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MEGF10   29634
Cards
Entrez_Gene (NCBI)MEGF10  84466  multiple EGF like domains 10
AliasesEMARDD
GeneCards (Weizmann)MEGF10
Ensembl hg19 (Hinxton)ENSG00000145794 [Gene_View]  chr5:126626456-126796910 [Contig_View]  MEGF10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145794 [Gene_View]  chr5:126626456-126796910 [Contig_View]  MEGF10 [Vega]
ICGC DataPortalENSG00000145794
TCGA cBioPortalMEGF10
AceView (NCBI)MEGF10
Genatlas (Paris)MEGF10
WikiGenes84466
SOURCE (Princeton)MEGF10
Genetics Home Reference (NIH)MEGF10
Genomic and cartography
GoldenPath hg19 (UCSC)MEGF10  -     chr5:126626456-126796910 +  5q23.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MEGF10  -     5q23.2   [Description]    (hg38-Dec_2013)
EnsemblMEGF10 - 5q23.2 [CytoView hg19]  MEGF10 - 5q23.2 [CytoView hg38]
Mapping of homologs : NCBIMEGF10 [Mapview hg19]  MEGF10 [Mapview hg38]
OMIM612453   614399   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001256545 NM_001308119 NM_001308121 NM_032446
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEGF10
Cluster EST : UnigeneHs.438709 [ NCBI ]
CGAP (NCI)Hs.438709
Alternative Splicing GalleryENSG00000145794
Gene ExpressionMEGF10 [ NCBI-GEO ]   MEGF10 [ EBI - ARRAY_EXPRESS ]   MEGF10 [ SEEK ]   MEGF10 [ MEM ]
Gene Expression Viewer (FireBrowse)MEGF10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84466
GTEX Portal (Tissue expression)MEGF10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KG7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KG7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KG7
Splice isoforms : SwissVarQ96KG7
PhosPhoSitePlusQ96KG7
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EMI (PS51041)   
Domains : Interpro (EBI)EGF-like_CS    EGF-like_dom    EMI_domain    Laminin_EGF   
Domain families : Pfam (Sanger)hEGF (PF12661)    Laminin_EGF (PF00053)   
Domain families : Pfam (NCBI)pfam12661    pfam00053   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_Lam (SM00180)  
Conserved Domain (NCBI)MEGF10
DMDM Disease mutations84466
Blocks (Seattle)MEGF10
SuperfamilyQ96KG7
Human Protein AtlasENSG00000145794
Peptide AtlasQ96KG7
HPRD14384
IPIIPI00064607   IPI00873983   
Protein Interaction databases
DIP (DOE-UCLA)Q96KG7
IntAct (EBI)Q96KG7
FunCoupENSG00000145794
BioGRIDMEGF10
STRING (EMBL)MEGF10
ZODIACMEGF10
Ontologies - Pathways
QuickGOQ96KG7
Ontology : AmiGOphagocytic cup  skeletal muscle satellite cell activation  skeletal muscle satellite cell differentiation  skeletal muscle satellite cell proliferation  integral component of membrane  basolateral plasma membrane  homotypic cell-cell adhesion  cell projection  recognition of apoptotic cell  regulation of skeletal muscle tissue development  regulation of muscle cell differentiation  muscle cell development  
Ontology : EGO-EBIphagocytic cup  skeletal muscle satellite cell activation  skeletal muscle satellite cell differentiation  skeletal muscle satellite cell proliferation  integral component of membrane  basolateral plasma membrane  homotypic cell-cell adhesion  cell projection  recognition of apoptotic cell  regulation of skeletal muscle tissue development  regulation of muscle cell differentiation  muscle cell development  
NDEx NetworkMEGF10
Atlas of Cancer Signalling NetworkMEGF10
Wikipedia pathwaysMEGF10
Orthology - Evolution
OrthoDB84466
GeneTree (enSembl)ENSG00000145794
Phylogenetic Trees/Animal Genes : TreeFamMEGF10
HOVERGENQ96KG7
HOGENOMQ96KG7
Homologs : HomoloGeneMEGF10
Homology/Alignments : Family Browser (UCSC)MEGF10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEGF10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEGF10
dbVarMEGF10
ClinVarMEGF10
1000_GenomesMEGF10 
Exome Variant ServerMEGF10
ExAC (Exome Aggregation Consortium)MEGF10 (select the gene name)
Genetic variants : HAPMAP84466
Genomic Variants (DGV)MEGF10 [DGVbeta]
DECIPHER (Syndromes)5:126626456-126796910  ENSG00000145794
CONAN: Copy Number AnalysisMEGF10 
Mutations
ICGC Data PortalMEGF10 
TCGA Data PortalMEGF10 
Broad Tumor PortalMEGF10
OASIS PortalMEGF10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMEGF10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMEGF10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MEGF10
DgiDB (Drug Gene Interaction Database)MEGF10
DoCM (Curated mutations)MEGF10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEGF10 (select a term)
intoGenMEGF10
Cancer3DMEGF10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612453    614399   
Orphanet23380    13937   
MedgenMEGF10
Genetic Testing Registry MEGF10
NextProtQ96KG7 [Medical]
TSGene84466
GENETestsMEGF10
Huge Navigator MEGF10 [HugePedia]
snp3D : Map Gene to Disease84466
BioCentury BCIQMEGF10
ClinGenMEGF10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84466
Chemical/Pharm GKB GenePA144596410
Clinical trialMEGF10
Miscellaneous
canSAR (ICR)MEGF10 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMEGF10
EVEXMEGF10
GoPubMedMEGF10
iHOPMEGF10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:14:55 CET 2017

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