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MEGF9 (multiple EGF like domains 9)

Identity

Alias_namesEGFL5
EGF-like-domain, multiple 5
multiple EGF-like-domains 9
Other alias
HGNC (Hugo) MEGF9
LocusID (NCBI) 1955
Atlas_Id 54828
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 120600918 and ends at 120714487 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDK5RAP2 (9q33.2) / MEGF9 (9q33.2)MEGF9 (9q33.2) / AP1G1 (16q22.2)MEGF9 (9q33.2) / MEGF9 (9q33.2)
OFCC1 (6p24.3) / MEGF9 (9q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MEGF9   3234
Cards
Entrez_Gene (NCBI)MEGF9  1955  multiple EGF like domains 9
AliasesEGFL5
GeneCards (Weizmann)MEGF9
Ensembl hg19 (Hinxton)ENSG00000106780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106780 [Gene_View]  chr9:120600918-120714487 [Contig_View]  MEGF9 [Vega]
ICGC DataPortalENSG00000106780
TCGA cBioPortalMEGF9
AceView (NCBI)MEGF9
Genatlas (Paris)MEGF9
WikiGenes1955
SOURCE (Princeton)MEGF9
Genetics Home Reference (NIH)MEGF9
Genomic and cartography
GoldenPath hg38 (UCSC)MEGF9  -     chr9:120600918-120714487 -  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEGF9  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblMEGF9 - 9q33.2 [CytoView hg19]  MEGF9 - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIMEGF9 [Mapview hg19]  MEGF9 [Mapview hg38]
OMIM604268   
Gene and transcription
Genbank (Entrez)AB011542 AJ420444 AK295380 AY358370 BC008313
RefSeq transcript (Entrez)NM_001080497
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEGF9
Cluster EST : UnigeneHs.744903 [ NCBI ]
CGAP (NCI)Hs.744903
Alternative Splicing GalleryENSG00000106780
Gene ExpressionMEGF9 [ NCBI-GEO ]   MEGF9 [ EBI - ARRAY_EXPRESS ]   MEGF9 [ SEEK ]   MEGF9 [ MEM ]
Gene Expression Viewer (FireBrowse)MEGF9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1955
GTEX Portal (Tissue expression)MEGF9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1U4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1U4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1U4
Splice isoforms : SwissVarQ9H1U4
PhosPhoSitePlusQ9H1U4
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_LAM_1 (PS01248)    EGF_LAM_2 (PS50027)   
Domains : Interpro (EBI)EGF-like_CS    EGF-like_dom    Laminin_EGF   
Domain families : Pfam (Sanger)Laminin_EGF (PF00053)   
Domain families : Pfam (NCBI)pfam00053   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_Lam (SM00180)  
Conserved Domain (NCBI)MEGF9
DMDM Disease mutations1955
Blocks (Seattle)MEGF9
SuperfamilyQ9H1U4
Human Protein AtlasENSG00000106780
Peptide AtlasQ9H1U4
IPIIPI00401283   IPI00941324   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1U4
IntAct (EBI)Q9H1U4
FunCoupENSG00000106780
BioGRIDMEGF9
STRING (EMBL)MEGF9
ZODIACMEGF9
Ontologies - Pathways
QuickGOQ9H1U4
Ontology : AmiGOcellular_component  basement membrane  biological_process  integral component of membrane  
Ontology : EGO-EBIcellular_component  basement membrane  biological_process  integral component of membrane  
NDEx NetworkMEGF9
Atlas of Cancer Signalling NetworkMEGF9
Wikipedia pathwaysMEGF9
Orthology - Evolution
OrthoDB1955
GeneTree (enSembl)ENSG00000106780
Phylogenetic Trees/Animal Genes : TreeFamMEGF9
HOVERGENQ9H1U4
HOGENOMQ9H1U4
Homologs : HomoloGeneMEGF9
Homology/Alignments : Family Browser (UCSC)MEGF9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEGF9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEGF9
dbVarMEGF9
ClinVarMEGF9
1000_GenomesMEGF9 
Exome Variant ServerMEGF9
ExAC (Exome Aggregation Consortium)MEGF9 (select the gene name)
Genetic variants : HAPMAP1955
Genomic Variants (DGV)MEGF9 [DGVbeta]
DECIPHERMEGF9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEGF9 
Mutations
ICGC Data PortalMEGF9 
TCGA Data PortalMEGF9 
Broad Tumor PortalMEGF9
OASIS PortalMEGF9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMEGF9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMEGF9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MEGF9
DgiDB (Drug Gene Interaction Database)MEGF9
DoCM (Curated mutations)MEGF9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEGF9 (select a term)
intoGenMEGF9
Cancer3DMEGF9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604268   
Orphanet
MedgenMEGF9
Genetic Testing Registry MEGF9
NextProtQ9H1U4 [Medical]
TSGene1955
GENETestsMEGF9
Target ValidationMEGF9
Huge Navigator MEGF9 [HugePedia]
snp3D : Map Gene to Disease1955
BioCentury BCIQMEGF9
ClinGenMEGF9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1955
Chemical/Pharm GKB GenePA27667
Clinical trialMEGF9
Miscellaneous
canSAR (ICR)MEGF9 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMEGF9
EVEXMEGF9
GoPubMedMEGF9
iHOPMEGF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:06:36 CEST 2017

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