Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MEI1 (meiotic double-stranded break formation protein 1)

Identity

Alias_namesmeiosis inhibitor 1
Alias_symbol (synonym)MGC40042
SPATA38
Other alias
HGNC (Hugo) MEI1
LocusID (NCBI) 150365
Atlas_Id 68897
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41699514 and ends at 41799455 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC134 (22q13.2) / MEI1 (22q13.2)SREBF2 (22q13.2) / MEI1 (22q13.2)WBP2NL (22q13.2) / MEI1 (22q13.2)
WBP2NL MEI1CCDC134 MEI1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MEI1   28613
Cards
Entrez_Gene (NCBI)MEI1  150365  meiotic double-stranded break formation protein 1
AliasesSPATA38
GeneCards (Weizmann)MEI1
Ensembl hg19 (Hinxton)ENSG00000167077 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167077 [Gene_View]  chr22:41699514-41799455 [Contig_View]  MEI1 [Vega]
ICGC DataPortalENSG00000167077
TCGA cBioPortalMEI1
AceView (NCBI)MEI1
Genatlas (Paris)MEI1
WikiGenes150365
SOURCE (Princeton)MEI1
Genetics Home Reference (NIH)MEI1
Genomic and cartography
GoldenPath hg38 (UCSC)MEI1  -     chr22:41699514-41799455 +  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEI1  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblMEI1 - 22q13.2 [CytoView hg19]  MEI1 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBIMEI1 [Mapview hg19]  MEI1 [Mapview hg38]
OMIM608797   
Gene and transcription
Genbank (Entrez)AK092934 AK093341 AK094461 AK097834 AK128158
RefSeq transcript (Entrez)NM_152513
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEI1
Cluster EST : UnigeneHs.116419 [ NCBI ]
CGAP (NCI)Hs.116419
Alternative Splicing GalleryENSG00000167077
Gene ExpressionMEI1 [ NCBI-GEO ]   MEI1 [ EBI - ARRAY_EXPRESS ]   MEI1 [ SEEK ]   MEI1 [ MEM ]
Gene Expression Viewer (FireBrowse)MEI1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150365
GTEX Portal (Tissue expression)MEI1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TIA1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TIA1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TIA1
Splice isoforms : SwissVarQ5TIA1
PhosPhoSitePlusQ5TIA1
Domains : Interpro (EBI)ARM-type_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MEI1
DMDM Disease mutations150365
Blocks (Seattle)MEI1
SuperfamilyQ5TIA1
Human Protein AtlasENSG00000167077
Peptide AtlasQ5TIA1
IPIIPI00903317   IPI00290916   IPI00795870   IPI00902603   IPI00892706   IPI00902519   IPI00902940   IPI01010883   IPI00922053   IPI00893447   
Protein Interaction databases
DIP (DOE-UCLA)Q5TIA1
IntAct (EBI)Q5TIA1
FunCoupENSG00000167077
BioGRIDMEI1
STRING (EMBL)MEI1
ZODIACMEI1
Ontologies - Pathways
QuickGOQ5TIA1
Ontology : AmiGOcell  meiosis I  male meiosis I  spermatid development  meiotic telomere clustering  
Ontology : EGO-EBIcell  meiosis I  male meiosis I  spermatid development  meiotic telomere clustering  
NDEx NetworkMEI1
Atlas of Cancer Signalling NetworkMEI1
Wikipedia pathwaysMEI1
Orthology - Evolution
OrthoDB150365
GeneTree (enSembl)ENSG00000167077
Phylogenetic Trees/Animal Genes : TreeFamMEI1
HOVERGENQ5TIA1
HOGENOMQ5TIA1
Homologs : HomoloGeneMEI1
Homology/Alignments : Family Browser (UCSC)MEI1
Gene fusions - Rearrangements
Fusion: TCGAWBP2NL MEI1
Fusion: TCGACCDC134 MEI1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEI1
dbVarMEI1
ClinVarMEI1
1000_GenomesMEI1 
Exome Variant ServerMEI1
ExAC (Exome Aggregation Consortium)MEI1 (select the gene name)
Genetic variants : HAPMAP150365
Genomic Variants (DGV)MEI1 [DGVbeta]
DECIPHERMEI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEI1 
Mutations
ICGC Data PortalMEI1 
TCGA Data PortalMEI1 
Broad Tumor PortalMEI1
OASIS PortalMEI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMEI1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMEI1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MEI1
DgiDB (Drug Gene Interaction Database)MEI1
DoCM (Curated mutations)MEI1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEI1 (select a term)
intoGenMEI1
Cancer3DMEI1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608797   
Orphanet
MedgenMEI1
Genetic Testing Registry MEI1
NextProtQ5TIA1 [Medical]
TSGene150365
GENETestsMEI1
Target ValidationMEI1
Huge Navigator MEI1 [HugePedia]
snp3D : Map Gene to Disease150365
BioCentury BCIQMEI1
ClinGenMEI1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150365
Chemical/Pharm GKB GenePA162395678
Clinical trialMEI1
Miscellaneous
canSAR (ICR)MEI1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMEI1
EVEXMEI1
GoPubMedMEI1
iHOPMEI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:50 CEST 2017

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