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MEIG1 (meiosis/spermiogenesis associated 1)

Identity

Alias_namesmeiosis expressed gene 1 homolog (mouse)
Alias_symbol (synonym)bA2K17.3
SPATA39
Other alias
HGNC (Hugo) MEIG1
LocusID (NCBI) 644890
Atlas_Id 68899
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 14959439 and ends at 14972851 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MEIG1   23429
Cards
Entrez_Gene (NCBI)MEIG1  644890  meiosis/spermiogenesis associated 1
AliasesSPATA39; bA2K17.3
GeneCards (Weizmann)MEIG1
Ensembl hg19 (Hinxton)ENSG00000197889 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197889 [Gene_View]  chr10:14959439-14972851 [Contig_View]  MEIG1 [Vega]
ICGC DataPortalENSG00000197889
TCGA cBioPortalMEIG1
AceView (NCBI)MEIG1
Genatlas (Paris)MEIG1
WikiGenes644890
SOURCE (Princeton)MEIG1
Genetics Home Reference (NIH)MEIG1
Genomic and cartography
GoldenPath hg38 (UCSC)MEIG1  -     chr10:14959439-14972851 +  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEIG1  -     10p13   [Description]    (hg19-Feb_2009)
EnsemblMEIG1 - 10p13 [CytoView hg19]  MEIG1 - 10p13 [CytoView hg38]
Mapping of homologs : NCBIMEIG1 [Mapview hg19]  MEIG1 [Mapview hg38]
OMIM614174   
Gene and transcription
Genbank (Entrez)AA971146 AI694434 BG182279 BG189096 BG189536
RefSeq transcript (Entrez)NM_001080836
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEIG1
Cluster EST : UnigeneHs.615546 [ NCBI ]
CGAP (NCI)Hs.615546
Alternative Splicing GalleryENSG00000197889
Gene ExpressionMEIG1 [ NCBI-GEO ]   MEIG1 [ EBI - ARRAY_EXPRESS ]   MEIG1 [ SEEK ]   MEIG1 [ MEM ]
Gene Expression Viewer (FireBrowse)MEIG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644890
GTEX Portal (Tissue expression)MEIG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JSS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JSS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JSS6
Splice isoforms : SwissVarQ5JSS6
PhosPhoSitePlusQ5JSS6
Domains : Interpro (EBI)Meiosis-expressed_gene_1   
Domain families : Pfam (Sanger)Meiosis_expr (PF15163)   
Domain families : Pfam (NCBI)pfam15163   
Domain structure : Prodom (Prabi Lyon)Meiosis-expressed_gene_1 (PD062760)   
Conserved Domain (NCBI)MEIG1
DMDM Disease mutations644890
Blocks (Seattle)MEIG1
SuperfamilyQ5JSS6
Human Protein AtlasENSG00000197889
Peptide AtlasQ5JSS6
IPIIPI00479411   
Protein Interaction databases
DIP (DOE-UCLA)Q5JSS6
IntAct (EBI)Q5JSS6
FunCoupENSG00000197889
BioGRIDMEIG1
STRING (EMBL)MEIG1
ZODIACMEIG1
Ontologies - Pathways
QuickGOQ5JSS6
Ontology : AmiGOnucleus  spermatogenesis  cell differentiation  
Ontology : EGO-EBInucleus  spermatogenesis  cell differentiation  
NDEx NetworkMEIG1
Atlas of Cancer Signalling NetworkMEIG1
Wikipedia pathwaysMEIG1
Orthology - Evolution
OrthoDB644890
GeneTree (enSembl)ENSG00000197889
Phylogenetic Trees/Animal Genes : TreeFamMEIG1
HOVERGENQ5JSS6
HOGENOMQ5JSS6
Homologs : HomoloGeneMEIG1
Homology/Alignments : Family Browser (UCSC)MEIG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEIG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEIG1
dbVarMEIG1
ClinVarMEIG1
1000_GenomesMEIG1 
Exome Variant ServerMEIG1
ExAC (Exome Aggregation Consortium)MEIG1 (select the gene name)
Genetic variants : HAPMAP644890
Genomic Variants (DGV)MEIG1 [DGVbeta]
DECIPHERMEIG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEIG1 
Mutations
ICGC Data PortalMEIG1 
TCGA Data PortalMEIG1 
Broad Tumor PortalMEIG1
OASIS PortalMEIG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMEIG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMEIG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MEIG1
DgiDB (Drug Gene Interaction Database)MEIG1
DoCM (Curated mutations)MEIG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEIG1 (select a term)
intoGenMEIG1
Cancer3DMEIG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614174   
Orphanet
MedgenMEIG1
Genetic Testing Registry MEIG1
NextProtQ5JSS6 [Medical]
TSGene644890
GENETestsMEIG1
Target ValidationMEIG1
Huge Navigator MEIG1 [HugePedia]
snp3D : Map Gene to Disease644890
BioCentury BCIQMEIG1
ClinGenMEIG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644890
Chemical/Pharm GKB GenePA134895701
Clinical trialMEIG1
Miscellaneous
canSAR (ICR)MEIG1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMEIG1
EVEXMEIG1
GoPubMedMEIG1
iHOPMEIG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:27:10 CEST 2017

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