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MEIOB (meiosis specific with OB domains)

Identity

Alias_namesC16orf73
chromosome 16 open reading frame 73
Alias_symbol (synonym)MGC35212
Other aliasgs129
HGNC (Hugo) MEIOB
LocusID (NCBI) 254528
Atlas_Id 53635
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1833983 and ends at 1872178 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
P4HTM (3p21.31) / MEIOB (16p13.3)SMPD3 (16q22.1) / MEIOB (16p13.3)SPSB3 (16p13.3) / MEIOB (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MEIOB   28569
Cards
Entrez_Gene (NCBI)MEIOB  254528  meiosis specific with OB domains
AliasesC16orf73; gs129
GeneCards (Weizmann)MEIOB
Ensembl hg19 (Hinxton)ENSG00000162039 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162039 [Gene_View]  chr16:1833983-1872178 [Contig_View]  MEIOB [Vega]
ICGC DataPortalENSG00000162039
TCGA cBioPortalMEIOB
AceView (NCBI)MEIOB
Genatlas (Paris)MEIOB
WikiGenes254528
SOURCE (Princeton)MEIOB
Genetics Home Reference (NIH)MEIOB
Genomic and cartography
GoldenPath hg38 (UCSC)MEIOB  -     chr16:1833983-1872178 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEIOB  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblMEIOB - 16p13.3 [CytoView hg19]  MEIOB - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIMEIOB [Mapview hg19]  MEIOB [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029829 CD300613 DB461414 DQ891299 DQ894483
RefSeq transcript (Entrez)NM_001163560 NM_152764
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEIOB
Cluster EST : UnigeneHs.729604 [ NCBI ]
CGAP (NCI)Hs.729604
Alternative Splicing GalleryENSG00000162039
Gene ExpressionMEIOB [ NCBI-GEO ]   MEIOB [ EBI - ARRAY_EXPRESS ]   MEIOB [ SEEK ]   MEIOB [ MEM ]
Gene Expression Viewer (FireBrowse)MEIOB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254528
GTEX Portal (Tissue expression)MEIOB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N635   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N635  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N635
Splice isoforms : SwissVarQ8N635
PhosPhoSitePlusQ8N635
Domains : Interpro (EBI)NA-bd_OB-fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MEIOB
DMDM Disease mutations254528
Blocks (Seattle)MEIOB
SuperfamilyQ8N635
Human Protein AtlasENSG00000162039
Peptide AtlasQ8N635
HPRD17530
IPIIPI00395938   IPI00939435   IPI00910711   
Protein Interaction databases
DIP (DOE-UCLA)Q8N635
IntAct (EBI)Q8N635
FunCoupENSG00000162039
BioGRIDMEIOB
STRING (EMBL)MEIOB
ZODIACMEIOB
Ontologies - Pathways
QuickGOQ8N635
Ontology : AmiGOresolution of meiotic recombination intermediates  resolution of meiotic recombination intermediates  double-strand break repair via homologous recombination  chromatin binding  single-stranded DNA binding  single-stranded DNA binding  nucleus  chromosome  cytoplasm  synapsis  male meiotic nuclear division  male meiosis I  female meiosis I  single-stranded DNA 3'-5' exodeoxyribonuclease activity  single-stranded DNA 3'-5' exodeoxyribonuclease activity  fertilization  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBIresolution of meiotic recombination intermediates  resolution of meiotic recombination intermediates  double-strand break repair via homologous recombination  chromatin binding  single-stranded DNA binding  single-stranded DNA binding  nucleus  chromosome  cytoplasm  synapsis  male meiotic nuclear division  male meiosis I  female meiosis I  single-stranded DNA 3'-5' exodeoxyribonuclease activity  single-stranded DNA 3'-5' exodeoxyribonuclease activity  fertilization  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkMEIOB
Atlas of Cancer Signalling NetworkMEIOB
Wikipedia pathwaysMEIOB
Orthology - Evolution
OrthoDB254528
GeneTree (enSembl)ENSG00000162039
Phylogenetic Trees/Animal Genes : TreeFamMEIOB
HOVERGENQ8N635
HOGENOMQ8N635
Homologs : HomoloGeneMEIOB
Homology/Alignments : Family Browser (UCSC)MEIOB
Gene fusions - Rearrangements
Fusion : MitelmanP4HTM/MEIOB [3p21.31/16p13.3]  [t(3;16)(p21;p13)]  
Fusion : MitelmanSMPD3/MEIOB [16q22.1/16p13.3]  [t(16;16)(p13;q22)]  
Fusion : MitelmanSPSB3/MEIOB [16p13.3/16p13.3]  [t(16;16)(p13;p13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEIOB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEIOB
dbVarMEIOB
ClinVarMEIOB
1000_GenomesMEIOB 
Exome Variant ServerMEIOB
ExAC (Exome Aggregation Consortium)MEIOB (select the gene name)
Genetic variants : HAPMAP254528
Genomic Variants (DGV)MEIOB [DGVbeta]
DECIPHERMEIOB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEIOB 
Mutations
ICGC Data PortalMEIOB 
TCGA Data PortalMEIOB 
Broad Tumor PortalMEIOB
OASIS PortalMEIOB [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMEIOB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MEIOB
DgiDB (Drug Gene Interaction Database)MEIOB
DoCM (Curated mutations)MEIOB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEIOB (select a term)
intoGenMEIOB
Cancer3DMEIOB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMEIOB
Genetic Testing Registry MEIOB
NextProtQ8N635 [Medical]
TSGene254528
GENETestsMEIOB
Target ValidationMEIOB
Huge Navigator MEIOB [HugePedia]
snp3D : Map Gene to Disease254528
BioCentury BCIQMEIOB
ClinGenMEIOB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254528
Chemical/Pharm GKB GenePA145149601
Clinical trialMEIOB
Miscellaneous
canSAR (ICR)MEIOB (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMEIOB
EVEXMEIOB
GoPubMedMEIOB
iHOPMEIOB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:06:36 CEST 2017

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