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MEIS3P1 (Meis homeobox 3 pseudogene 1)

Identity

Alias_namesMEIS3
MEIS4
Meis1, myeloid ecotropic viral integration site 1 homolog 3 (mouse)
Meis1, myeloid ecotropic viral integration site 1 homolog 4 (mouse)
Meis1 homolog 3 (mouse) pseudogene 1
Alias_symbol (synonym)MRG2
Other alias
HGNC (Hugo) MEIS3P1
LocusID (NCBI) 4213
Atlas_Id 41333
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 15786850 and ends at 15789706 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MEIS3P1   7002
Cards
Entrez_Gene (NCBI)MEIS3P1  4213  Meis homeobox 3 pseudogene 1
AliasesMEIS3; MEIS4; MRG2
GeneCards (Weizmann)MEIS3P1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:15786850-15789706 [Contig_View]  MEIS3P1 [Vega]
TCGA cBioPortalMEIS3P1
AceView (NCBI)MEIS3P1
Genatlas (Paris)MEIS3P1
WikiGenes4213
SOURCE (Princeton)MEIS3P1
Genetics Home Reference (NIH)MEIS3P1
Genomic and cartography
GoldenPath hg38 (UCSC)MEIS3P1  -     chr17:15786850-15789706 +  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEIS3P1  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblMEIS3P1 - 17p12 [CytoView hg19]  MEIS3P1 - 17p12 [CytoView hg38]
Mapping of homologs : NCBIMEIS3P1 [Mapview hg19]  MEIS3P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054814 BM463727 BQ575773 BU685266 U68385
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEIS3P1
Cluster EST : UnigeneHs.356135 [ NCBI ]
CGAP (NCI)Hs.356135
Gene ExpressionMEIS3P1 [ NCBI-GEO ]   MEIS3P1 [ EBI - ARRAY_EXPRESS ]   MEIS3P1 [ SEEK ]   MEIS3P1 [ MEM ]
Gene Expression Viewer (FireBrowse)MEIS3P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4213
GTEX Portal (Tissue expression)MEIS3P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDR6
Splice isoforms : SwissVarA6NDR6
PhosPhoSitePlusA6NDR6
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_dom    Homeobox_KN_domain    PKNOX/Meis_N   
Domain families : Pfam (Sanger)Homeobox_KN (PF05920)    Meis_PKNOX_N (PF16493)   
Domain families : Pfam (NCBI)pfam05920    pfam16493   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)MEIS3P1
DMDM Disease mutations4213
Blocks (Seattle)MEIS3P1
SuperfamilyA6NDR6
Peptide AtlasA6NDR6
IPIIPI00747084   
Protein Interaction databases
DIP (DOE-UCLA)A6NDR6
IntAct (EBI)A6NDR6
BioGRIDMEIS3P1
STRING (EMBL)MEIS3P1
ZODIACMEIS3P1
Ontologies - Pathways
QuickGOA6NDR6
Ontology : AmiGODNA binding  nucleus  regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  nucleus  regulation of transcription, DNA-templated  
NDEx NetworkMEIS3P1
Atlas of Cancer Signalling NetworkMEIS3P1
Wikipedia pathwaysMEIS3P1
Orthology - Evolution
OrthoDB4213
Phylogenetic Trees/Animal Genes : TreeFamMEIS3P1
HOVERGENA6NDR6
HOGENOMA6NDR6
Homologs : HomoloGeneMEIS3P1
Homology/Alignments : Family Browser (UCSC)MEIS3P1
Gene fusions - Rearrangements
Tumor Fusion PortalMEIS3P1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEIS3P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEIS3P1
dbVarMEIS3P1
ClinVarMEIS3P1
1000_GenomesMEIS3P1 
Exome Variant ServerMEIS3P1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP4213
Genomic Variants (DGV)MEIS3P1 [DGVbeta]
DECIPHERMEIS3P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEIS3P1 
Mutations
ICGC Data PortalMEIS3P1 
TCGA Data PortalMEIS3P1 
Broad Tumor PortalMEIS3P1
OASIS PortalMEIS3P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMEIS3P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MEIS3P1
DgiDB (Drug Gene Interaction Database)MEIS3P1
DoCM (Curated mutations)MEIS3P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEIS3P1 (select a term)
intoGenMEIS3P1
Cancer3DMEIS3P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMEIS3P1
MedgenMEIS3P1
Genetic Testing Registry MEIS3P1
NextProtA6NDR6 [Medical]
TSGene4213
GENETestsMEIS3P1
Target ValidationMEIS3P1
Huge Navigator MEIS3P1 [HugePedia]
snp3D : Map Gene to Disease4213
BioCentury BCIQMEIS3P1
ClinGenMEIS3P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4213
Chemical/Pharm GKB GenePA134990815
Clinical trialMEIS3P1
Miscellaneous
canSAR (ICR)MEIS3P1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMEIS3P1
EVEXMEIS3P1
GoPubMedMEIS3P1
iHOPMEIS3P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:22:07 CET 2017

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