Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MEMO1 (mediator of cell motility 1)

Identity

Alias_namesC2orf4
chromosome 2 open reading frame 4
Alias_symbol (synonym)CGI-27
MEMO
Other aliasNS5ATP7
HGNC (Hugo) MEMO1
LocusID (NCBI) 51072
Atlas_Id 53557
Location 2p22.3  [Link to chromosome band 2p22]
Location_base_pair Starts at 31867810 and ends at 32010664 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASH2L (8p11.23) / MEMO1 (2p23.1)GALNT2 (1q42.13) / MEMO1 (2p23.1)MAPK14 (6p21.31) / MEMO1 (2p23.1)
MEMO1 (2p23.1) / CORIN (4p12)MEMO1 (2p23.1) / DPY30 (2p22.3)MEMO1 (2p23.1) / KIAA0391 (14q13.2)
MEMO1 (2p23.1) / MALAT1 (11q13.1)MEMO1 (2p23.1) / MEMO1 (2p23.1)SEC31A (4q21.22) / MEMO1 (2p23.1)
MEMO1 2p23.1 / DPY30 2p22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MEMO1   14014
Cards
Entrez_Gene (NCBI)MEMO1  51072  mediator of cell motility 1
AliasesC2orf4; CGI-27; MEMO; NS5ATP7
GeneCards (Weizmann)MEMO1
Ensembl hg19 (Hinxton)ENSG00000162959 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162959 [Gene_View]  chr2:31867810-32010664 [Contig_View]  MEMO1 [Vega]
ICGC DataPortalENSG00000162959
TCGA cBioPortalMEMO1
AceView (NCBI)MEMO1
Genatlas (Paris)MEMO1
WikiGenes51072
SOURCE (Princeton)MEMO1
Genetics Home Reference (NIH)MEMO1
Genomic and cartography
GoldenPath hg38 (UCSC)MEMO1  -     chr2:31867810-32010664 -  2p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEMO1  -     2p22.3   [Description]    (hg19-Feb_2009)
EnsemblMEMO1 - 2p22.3 [CytoView hg19]  MEMO1 - 2p22.3 [CytoView hg38]
Mapping of homologs : NCBIMEMO1 [Mapview hg19]  MEMO1 [Mapview hg38]
OMIM611786   
Gene and transcription
Genbank (Entrez)AB041018 AB041019 AF132961 AF363446 AF529368
RefSeq transcript (Entrez)NM_001137602 NM_001301833 NM_001301852 NM_015955
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEMO1
Cluster EST : UnigeneHs.444969 [ NCBI ]
CGAP (NCI)Hs.444969
Alternative Splicing GalleryENSG00000162959
Gene ExpressionMEMO1 [ NCBI-GEO ]   MEMO1 [ EBI - ARRAY_EXPRESS ]   MEMO1 [ SEEK ]   MEMO1 [ MEM ]
Gene Expression Viewer (FireBrowse)MEMO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51072
GTEX Portal (Tissue expression)MEMO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y316   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y316  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y316
Splice isoforms : SwissVarQ9Y316
PhosPhoSitePlusQ9Y316
Domains : Interpro (EBI)MEMO1_fam   
Domain families : Pfam (Sanger)Memo (PF01875)   
Domain families : Pfam (NCBI)pfam01875   
Conserved Domain (NCBI)MEMO1
DMDM Disease mutations51072
Blocks (Seattle)MEMO1
PDB (SRS)3BCZ    3BD0   
PDB (PDBSum)3BCZ    3BD0   
PDB (IMB)3BCZ    3BD0   
PDB (RSDB)3BCZ    3BD0   
Structural Biology KnowledgeBase3BCZ    3BD0   
SCOP (Structural Classification of Proteins)3BCZ    3BD0   
CATH (Classification of proteins structures)3BCZ    3BD0   
SuperfamilyQ9Y316
Human Protein AtlasENSG00000162959
Peptide AtlasQ9Y316
HPRD12814
IPIIPI00032426   IPI01015226   IPI00514619   IPI00913927   IPI00893436   IPI00893861   IPI00893200   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y316
IntAct (EBI)Q9Y316
FunCoupENSG00000162959
BioGRIDMEMO1
STRING (EMBL)MEMO1
ZODIACMEMO1
Ontologies - Pathways
QuickGOQ9Y316
Ontology : AmiGOprotein binding  nucleus  cytosol  cytosol  regulation of microtubule-based process  regulation of cell motility  
Ontology : EGO-EBIprotein binding  nucleus  cytosol  cytosol  regulation of microtubule-based process  regulation of cell motility  
NDEx NetworkMEMO1
Atlas of Cancer Signalling NetworkMEMO1
Wikipedia pathwaysMEMO1
Orthology - Evolution
OrthoDB51072
GeneTree (enSembl)ENSG00000162959
Phylogenetic Trees/Animal Genes : TreeFamMEMO1
HOVERGENQ9Y316
HOGENOMQ9Y316
Homologs : HomoloGeneMEMO1
Homology/Alignments : Family Browser (UCSC)MEMO1
Gene fusions - Rearrangements
Fusion : MitelmanMEMO1/DPY30 [2p23.1/2p22.3]  
Fusion: TCGAMEMO1 2p23.1 DPY30 2p22.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEMO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEMO1
dbVarMEMO1
ClinVarMEMO1
1000_GenomesMEMO1 
Exome Variant ServerMEMO1
ExAC (Exome Aggregation Consortium)MEMO1 (select the gene name)
Genetic variants : HAPMAP51072
Genomic Variants (DGV)MEMO1 [DGVbeta]
DECIPHERMEMO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEMO1 
Mutations
ICGC Data PortalMEMO1 
TCGA Data PortalMEMO1 
Broad Tumor PortalMEMO1
OASIS PortalMEMO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMEMO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMEMO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MEMO1
DgiDB (Drug Gene Interaction Database)MEMO1
DoCM (Curated mutations)MEMO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEMO1 (select a term)
intoGenMEMO1
Cancer3DMEMO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611786   
Orphanet
MedgenMEMO1
Genetic Testing Registry MEMO1
NextProtQ9Y316 [Medical]
TSGene51072
GENETestsMEMO1
Huge Navigator MEMO1 [HugePedia]
snp3D : Map Gene to Disease51072
BioCentury BCIQMEMO1
ClinGenMEMO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51072
Chemical/Pharm GKB GenePA162395745
Clinical trialMEMO1
Miscellaneous
canSAR (ICR)MEMO1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMEMO1
EVEXMEMO1
GoPubMedMEMO1
iHOPMEMO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:24:40 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.