Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MEOX1 (mesenchyme homeobox 1)

Identity

Alias (NCBI)KFS2
MOX1
HGNC (Hugo) MEOX1
HGNC Alias symbMOX1
HGNC Previous namemesenchyme homeo box 1
LocusID (NCBI) 4222
Atlas_Id 41335
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43640390 and ends at 43661563 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)MEOX1   7013
Cards
Entrez_Gene (NCBI)MEOX1    mesenchyme homeobox 1
AliasesKFS2; MOX1
GeneCards (Weizmann)MEOX1
Ensembl hg19 (Hinxton)ENSG00000005102 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005102 [Gene_View]  ENSG00000005102 [Sequence]  chr17:43640390-43661563 [Contig_View]  MEOX1 [Vega]
ICGC DataPortalENSG00000005102
TCGA cBioPortalMEOX1
AceView (NCBI)MEOX1
Genatlas (Paris)MEOX1
SOURCE (Princeton)MEOX1
Genetics Home Reference (NIH)MEOX1
Genomic and cartography
GoldenPath hg38 (UCSC)MEOX1  -     chr17:43640390-43661563 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEOX1  -     17q21.31   [Description]    (hg19-Feb_2009)
GoldenPathMEOX1 - 17q21.31 [CytoView hg19]  MEOX1 - 17q21.31 [CytoView hg38]
ImmunoBaseENSG00000005102
genome Data Viewer NCBIMEOX1 [Mapview hg19]  
OMIM214300   600147   
Gene and transcription
Genbank (Entrez)AK291139 AW410297 BC069474 BC069506 BE898972
RefSeq transcript (Entrez)NM_001040002 NM_004527 NM_013999
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEOX1
Alternative Splicing GalleryENSG00000005102
Gene ExpressionMEOX1 [ NCBI-GEO ]   MEOX1 [ EBI - ARRAY_EXPRESS ]   MEOX1 [ SEEK ]   MEOX1 [ MEM ]
Gene Expression Viewer (FireBrowse)MEOX1 [ Firebrowse - Broad ]
GenevisibleExpression of MEOX1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4222
GTEX Portal (Tissue expression)MEOX1
Human Protein AtlasENSG00000005102-MEOX1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50221   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP50221  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP50221
Splice isoforms : SwissVarP50221
PhosPhoSitePlusP50221
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like_sf    Homeobox_CS    Homeobox_dom    Homeobox_metazoa    MOX-1/MOX-2   
Domain families : Pfam (Sanger)Homeodomain (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)MEOX1
Blocks (Seattle)MEOX1
SuperfamilyP50221
Human Protein Atlas [tissue]ENSG00000005102-MEOX1 [tissue]
Peptide AtlasP50221
HPRD02537
IPIIPI00030728   IPI01022082   IPI00744956   IPI00022237   
Protein Interaction databases
DIP (DOE-UCLA)P50221
IntAct (EBI)P50221
BioGRIDMEOX1
STRING (EMBL)MEOX1
ZODIACMEOX1
Ontologies - Pathways
QuickGOP50221
Ontology : AmiGOnuclear chromatin  RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  somite specification  molecular_function  chromatin binding  DNA-binding transcription factor activity  protein binding  nucleus  nucleus  cytoplasm  multicellular organism development  biological_process  sequence-specific DNA binding  positive regulation of transcription by RNA polymerase II  hematopoietic stem cell differentiation  somite development  somite development  sclerotome development  HMG box domain binding  
Ontology : EGO-EBInuclear chromatin  RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  somite specification  molecular_function  chromatin binding  DNA-binding transcription factor activity  protein binding  nucleus  nucleus  cytoplasm  multicellular organism development  biological_process  sequence-specific DNA binding  positive regulation of transcription by RNA polymerase II  hematopoietic stem cell differentiation  somite development  somite development  sclerotome development  HMG box domain binding  
NDEx NetworkMEOX1
Atlas of Cancer Signalling NetworkMEOX1
Wikipedia pathwaysMEOX1
Orthology - Evolution
OrthoDB4222
GeneTree (enSembl)ENSG00000005102
Phylogenetic Trees/Animal Genes : TreeFamMEOX1
HOGENOMP50221
Homologs : HomoloGeneMEOX1
Homology/Alignments : Family Browser (UCSC)MEOX1
Gene fusions - Rearrangements
Fusion : QuiverMEOX1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEOX1 [hg38]
dbVarMEOX1
ClinVarMEOX1
MonarchMEOX1
1000_GenomesMEOX1 
Exome Variant ServerMEOX1
GNOMAD BrowserENSG00000005102
Varsome BrowserMEOX1
Genomic Variants (DGV)MEOX1 [DGVbeta]
DECIPHERMEOX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEOX1 
Mutations
ICGC Data PortalMEOX1 
TCGA Data PortalMEOX1 
Broad Tumor PortalMEOX1
OASIS PortalMEOX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMEOX1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMEOX1
Mutations and Diseases : HGMDMEOX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch MEOX1
DgiDB (Drug Gene Interaction Database)MEOX1
DoCM (Curated mutations)MEOX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEOX1 (select a term)
intoGenMEOX1
Cancer3DMEOX1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM214300    600147   
Orphanet3709   
DisGeNETMEOX1
MedgenMEOX1
Genetic Testing Registry MEOX1
NextProtP50221 [Medical]
GENETestsMEOX1
Target ValidationMEOX1
Huge Navigator MEOX1 [HugePedia]
ClinGenMEOX1
Clinical trials, drugs, therapy
MyCancerGenomeMEOX1
Protein Interactions : CTD
Pharm GKB GenePA30747
PharosP50221
Clinical trialMEOX1
Miscellaneous
canSAR (ICR)MEOX1 (select the gene name)
HarmonizomeMEOX1
DataMed IndexMEOX1
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMEOX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:24:35 CET 2021

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