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MEOX1 (mesenchyme homeobox 1)

Identity

Alias_namesmesenchyme homeo box 1
Alias_symbol (synonym)MOX1
Other aliasKFS2
HGNC (Hugo) MEOX1
LocusID (NCBI) 4222
Atlas_Id 41335
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43640390 and ends at 43661894 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MEOX1   7013
Cards
Entrez_Gene (NCBI)MEOX1  4222  mesenchyme homeobox 1
AliasesKFS2; MOX1
GeneCards (Weizmann)MEOX1
Ensembl hg19 (Hinxton)ENSG00000005102 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005102 [Gene_View]  chr17:43640390-43661894 [Contig_View]  MEOX1 [Vega]
ICGC DataPortalENSG00000005102
TCGA cBioPortalMEOX1
AceView (NCBI)MEOX1
Genatlas (Paris)MEOX1
WikiGenes4222
SOURCE (Princeton)MEOX1
Genetics Home Reference (NIH)MEOX1
Genomic and cartography
GoldenPath hg38 (UCSC)MEOX1  -     chr17:43640390-43661894 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEOX1  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblMEOX1 - 17q21.31 [CytoView hg19]  MEOX1 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIMEOX1 [Mapview hg19]  MEOX1 [Mapview hg38]
OMIM214300   600147   
Gene and transcription
Genbank (Entrez)AK291139 AW410297 BC069474 BC069506 BE898972
RefSeq transcript (Entrez)NM_001040002 NM_004527 NM_013999
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEOX1
Cluster EST : UnigeneHs.438 [ NCBI ]
CGAP (NCI)Hs.438
Alternative Splicing GalleryENSG00000005102
Gene ExpressionMEOX1 [ NCBI-GEO ]   MEOX1 [ EBI - ARRAY_EXPRESS ]   MEOX1 [ SEEK ]   MEOX1 [ MEM ]
Gene Expression Viewer (FireBrowse)MEOX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4222
GTEX Portal (Tissue expression)MEOX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50221   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP50221  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP50221
Splice isoforms : SwissVarP50221
PhosPhoSitePlusP50221
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    Homeobox_metazoa   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)MEOX1
DMDM Disease mutations4222
Blocks (Seattle)MEOX1
SuperfamilyP50221
Human Protein AtlasENSG00000005102
Peptide AtlasP50221
HPRD02537
IPIIPI00030728   IPI01022082   IPI00744956   IPI00022237   
Protein Interaction databases
DIP (DOE-UCLA)P50221
IntAct (EBI)P50221
FunCoupENSG00000005102
BioGRIDMEOX1
STRING (EMBL)MEOX1
ZODIACMEOX1
Ontologies - Pathways
QuickGOP50221
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  core promoter sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  somite specification  molecular_function  chromatin binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  cytoplasm  transcription from RNA polymerase II promoter  multicellular organism development  biological_process  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  hematopoietic stem cell differentiation  somite development  somite development  sclerotome development  HMG box domain binding  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  core promoter sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  somite specification  molecular_function  chromatin binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  cytoplasm  transcription from RNA polymerase II promoter  multicellular organism development  biological_process  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  hematopoietic stem cell differentiation  somite development  somite development  sclerotome development  HMG box domain binding  
NDEx NetworkMEOX1
Atlas of Cancer Signalling NetworkMEOX1
Wikipedia pathwaysMEOX1
Orthology - Evolution
OrthoDB4222
GeneTree (enSembl)ENSG00000005102
Phylogenetic Trees/Animal Genes : TreeFamMEOX1
HOVERGENP50221
HOGENOMP50221
Homologs : HomoloGeneMEOX1
Homology/Alignments : Family Browser (UCSC)MEOX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEOX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEOX1
dbVarMEOX1
ClinVarMEOX1
1000_GenomesMEOX1 
Exome Variant ServerMEOX1
ExAC (Exome Aggregation Consortium)MEOX1 (select the gene name)
Genetic variants : HAPMAP4222
Genomic Variants (DGV)MEOX1 [DGVbeta]
DECIPHERMEOX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEOX1 
Mutations
ICGC Data PortalMEOX1 
TCGA Data PortalMEOX1 
Broad Tumor PortalMEOX1
OASIS PortalMEOX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMEOX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMEOX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch MEOX1
DgiDB (Drug Gene Interaction Database)MEOX1
DoCM (Curated mutations)MEOX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEOX1 (select a term)
intoGenMEOX1
Cancer3DMEOX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM214300    600147   
Orphanet3709   
MedgenMEOX1
Genetic Testing Registry MEOX1
NextProtP50221 [Medical]
TSGene4222
GENETestsMEOX1
Target ValidationMEOX1
Huge Navigator MEOX1 [HugePedia]
snp3D : Map Gene to Disease4222
BioCentury BCIQMEOX1
ClinGenMEOX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4222
Chemical/Pharm GKB GenePA30747
Clinical trialMEOX1
Miscellaneous
canSAR (ICR)MEOX1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMEOX1
EVEXMEOX1
GoPubMedMEOX1
iHOPMEOX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:17:44 CEST 2017

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