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MEPE (matrix extracellular phosphoglycoprotein)

Identity

Alias_namesmatrix
Other aliasOF45
HGNC (Hugo) MEPE
LocusID (NCBI) 56955
Atlas_Id 41337
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 87821398 and ends at 87846816 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MEPE   13361
Cards
Entrez_Gene (NCBI)MEPE  56955  matrix extracellular phosphoglycoprotein
AliasesOF45
GeneCards (Weizmann)MEPE
Ensembl hg19 (Hinxton)ENSG00000152595 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152595 [Gene_View]  chr4:87821398-87846816 [Contig_View]  MEPE [Vega]
ICGC DataPortalENSG00000152595
TCGA cBioPortalMEPE
AceView (NCBI)MEPE
Genatlas (Paris)MEPE
WikiGenes56955
SOURCE (Princeton)MEPE
Genetics Home Reference (NIH)MEPE
Genomic and cartography
GoldenPath hg38 (UCSC)MEPE  -     chr4:87821398-87846816 +  4q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEPE  -     4q22.1   [Description]    (hg19-Feb_2009)
EnsemblMEPE - 4q22.1 [CytoView hg19]  MEPE - 4q22.1 [CytoView hg38]
Mapping of homologs : NCBIMEPE [Mapview hg19]  MEPE [Mapview hg38]
OMIM605912   
Gene and transcription
Genbank (Entrez)AF325916 AJ276396 AK075076 AK307774 BC128158
RefSeq transcript (Entrez)NM_001184694 NM_001184695 NM_001184696 NM_001184697 NM_001291183 NM_020203
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEPE
Cluster EST : UnigeneHs.676357 [ NCBI ]
CGAP (NCI)Hs.676357
Alternative Splicing GalleryENSG00000152595
Gene ExpressionMEPE [ NCBI-GEO ]   MEPE [ EBI - ARRAY_EXPRESS ]   MEPE [ SEEK ]   MEPE [ MEM ]
Gene Expression Viewer (FireBrowse)MEPE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56955
GTEX Portal (Tissue expression)MEPE
Human Protein AtlasENSG00000152595-MEPE [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ76
Splice isoforms : SwissVarQ9NQ76
PhosPhoSitePlusQ9NQ76
Domains : Interpro (EBI)Osteoregulin   
Domain families : Pfam (Sanger)Osteoregulin (PF07175)   
Domain families : Pfam (NCBI)pfam07175   
Domain structure : Prodom (Prabi Lyon)Osteoregulin (PD338624)   
Conserved Domain (NCBI)MEPE
DMDM Disease mutations56955
Blocks (Seattle)MEPE
SuperfamilyQ9NQ76
Human Protein Atlas [tissue]ENSG00000152595-MEPE [tissue]
Peptide AtlasQ9NQ76
HPRD06908
IPIIPI00024648   IPI01008876   IPI00791153   IPI00968060   IPI00966104   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ76
IntAct (EBI)Q9NQ76
FunCoupENSG00000152595
BioGRIDMEPE
STRING (EMBL)MEPE
ZODIACMEPE
Ontologies - Pathways
QuickGOQ9NQ76
Ontology : AmiGOskeletal system development  extracellular matrix structural constituent  protein binding  proteinaceous extracellular matrix  negative regulation of bone mineralization  biomineral tissue development  regulation of bone remodeling  extracellular matrix protein binding  
Ontology : EGO-EBIskeletal system development  extracellular matrix structural constituent  protein binding  proteinaceous extracellular matrix  negative regulation of bone mineralization  biomineral tissue development  regulation of bone remodeling  extracellular matrix protein binding  
NDEx NetworkMEPE
Atlas of Cancer Signalling NetworkMEPE
Wikipedia pathwaysMEPE
Orthology - Evolution
OrthoDB56955
GeneTree (enSembl)ENSG00000152595
Phylogenetic Trees/Animal Genes : TreeFamMEPE
HOVERGENQ9NQ76
HOGENOMQ9NQ76
Homologs : HomoloGeneMEPE
Homology/Alignments : Family Browser (UCSC)MEPE
Gene fusions - Rearrangements
Tumor Fusion PortalMEPE
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEPE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEPE
dbVarMEPE
ClinVarMEPE
1000_GenomesMEPE 
Exome Variant ServerMEPE
ExAC (Exome Aggregation Consortium)ENSG00000152595
GNOMAD BrowserENSG00000152595
Genetic variants : HAPMAP56955
Genomic Variants (DGV)MEPE [DGVbeta]
DECIPHERMEPE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEPE 
Mutations
ICGC Data PortalMEPE 
TCGA Data PortalMEPE 
Broad Tumor PortalMEPE
OASIS PortalMEPE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMEPE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMEPE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MEPE
DgiDB (Drug Gene Interaction Database)MEPE
DoCM (Curated mutations)MEPE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEPE (select a term)
intoGenMEPE
Cancer3DMEPE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605912   
Orphanet
DisGeNETMEPE
MedgenMEPE
Genetic Testing Registry MEPE
NextProtQ9NQ76 [Medical]
TSGene56955
GENETestsMEPE
Target ValidationMEPE
Huge Navigator MEPE [HugePedia]
snp3D : Map Gene to Disease56955
BioCentury BCIQMEPE
ClinGenMEPE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56955
Chemical/Pharm GKB GenePA30755
Clinical trialMEPE
Miscellaneous
canSAR (ICR)MEPE (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMEPE
EVEXMEPE
GoPubMedMEPE
iHOPMEPE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:22:09 CET 2017

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