Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MESD (mesoderm development LRP chaperone)

Identity

Other aliasBOCA
MESDC2
HGNC (Hugo) MESD
LocusID (NCBI) 23184
Atlas_Id 56962
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 80975745 and ends at 80989878 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)MESD   13520
Cards
Entrez_Gene (NCBI)MESD  23184  mesoderm development LRP chaperone
AliasesBOCA; MESDC2
GeneCards (Weizmann)MESD
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:80975745-80989878 [Contig_View]  MESD [Vega]
TCGA cBioPortalMESD
AceView (NCBI)MESD
Genatlas (Paris)MESD
WikiGenes23184
SOURCE (Princeton)MESD
Genetics Home Reference (NIH)MESD
Genomic and cartography
GoldenPath hg38 (UCSC)MESD  -     chr15:80975745-80989878 -  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MESD  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblMESD - 15q25.1 [CytoView hg19]  MESD - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBIMESD [Mapview hg19]  MESD [Mapview hg38]
OMIM607783   
Gene and transcription
Genbank (Entrez)AI911839 AK026606 AK301416 AY359110 BC007867
RefSeq transcript (Entrez)NM_015154
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MESD
Cluster EST : UnigeneHs.732380 [ NCBI ]
CGAP (NCI)Hs.732380
Gene ExpressionMESD [ NCBI-GEO ]   MESD [ EBI - ARRAY_EXPRESS ]   MESD [ SEEK ]   MESD [ MEM ]
Gene Expression Viewer (FireBrowse)MESD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23184
GTEX Portal (Tissue expression)MESD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14696   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14696  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14696
Splice isoforms : SwissVarQ14696
PhosPhoSitePlusQ14696
Domains : Interpro (EBI)Mesoderm_development_cand-2   
Domain families : Pfam (Sanger)Mesd (PF10185)   
Domain families : Pfam (NCBI)pfam10185   
Conserved Domain (NCBI)MESD
DMDM Disease mutations23184
Blocks (Seattle)MESD
SuperfamilyQ14696
Peptide AtlasQ14696
IPIIPI00399089   IPI00796904   
Protein Interaction databases
DIP (DOE-UCLA)Q14696
IntAct (EBI)Q14696
BioGRIDMESD
STRING (EMBL)MESD
ZODIACMESD
Ontologies - Pathways
QuickGOQ14696
Ontology : AmiGOmolecular_function  cellular_component  endoplasmic reticulum  plasma membrane  protein folding  mesoderm development  Wnt signaling pathway  protein localization to cell surface  low-density lipoprotein particle receptor binding  
Ontology : EGO-EBImolecular_function  cellular_component  endoplasmic reticulum  plasma membrane  protein folding  mesoderm development  Wnt signaling pathway  protein localization to cell surface  low-density lipoprotein particle receptor binding  
NDEx NetworkMESD
Atlas of Cancer Signalling NetworkMESD
Wikipedia pathwaysMESD
Orthology - Evolution
OrthoDB23184
Phylogenetic Trees/Animal Genes : TreeFamMESD
HOVERGENQ14696
HOGENOMQ14696
Homologs : HomoloGeneMESD
Homology/Alignments : Family Browser (UCSC)MESD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMESD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MESD
dbVarMESD
ClinVarMESD
1000_GenomesMESD 
Exome Variant ServerMESD
ExAC (Exome Aggregation Consortium)MESD (select the gene name)
Genetic variants : HAPMAP23184
Genomic Variants (DGV)MESD [DGVbeta]
DECIPHERMESD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMESD 
Mutations
ICGC Data PortalMESD 
TCGA Data PortalMESD 
Broad Tumor PortalMESD
OASIS PortalMESD [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMESD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MESD
DgiDB (Drug Gene Interaction Database)MESD
DoCM (Curated mutations)MESD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MESD (select a term)
intoGenMESD
Cancer3DMESD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607783   
Orphanet
MedgenMESD
Genetic Testing Registry MESD
NextProtQ14696 [Medical]
TSGene23184
GENETestsMESD
Target ValidationMESD
Huge Navigator MESD [HugePedia]
snp3D : Map Gene to Disease23184
BioCentury BCIQMESD
ClinGenMESD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23184
Chemical/Pharm GKB GenePA30761
Clinical trialMESD
Miscellaneous
canSAR (ICR)MESD (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMESD
EVEXMESD
GoPubMedMESD
iHOPMESD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:17:46 CEST 2017

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