Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MESDC1 (mesoderm development candidate 1)

Identity

Alias_symbol (synonym)MGC99595
Other alias-
HGNC (Hugo) MESDC1
LocusID (NCBI) 59274
Atlas_Id 52853
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 81000954 and ends at 81004004 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MESDC1 (15q25.1) / MESDC1 (15q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MESDC1   13519
Cards
Entrez_Gene (NCBI)MESDC1  59274  mesoderm development candidate 1
Aliases
GeneCards (Weizmann)MESDC1
Ensembl hg19 (Hinxton)ENSG00000140406 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140406 [Gene_View]  chr15:81000954-81004004 [Contig_View]  MESDC1 [Vega]
ICGC DataPortalENSG00000140406
TCGA cBioPortalMESDC1
AceView (NCBI)MESDC1
Genatlas (Paris)MESDC1
WikiGenes59274
SOURCE (Princeton)MESDC1
Genetics Home Reference (NIH)MESDC1
Genomic and cartography
GoldenPath hg38 (UCSC)MESDC1  -     chr15:81000954-81004004 +  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MESDC1  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblMESDC1 - 15q25.1 [CytoView hg19]  MESDC1 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBIMESDC1 [Mapview hg19]  MESDC1 [Mapview hg38]
OMIM615466   
Gene and transcription
Genbank (Entrez)AY007810 BC001373 BC084554 CN370100 DN995580
RefSeq transcript (Entrez)NM_022566
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MESDC1
Cluster EST : UnigeneHs.513071 [ NCBI ]
CGAP (NCI)Hs.513071
Alternative Splicing GalleryENSG00000140406
Gene ExpressionMESDC1 [ NCBI-GEO ]   MESDC1 [ EBI - ARRAY_EXPRESS ]   MESDC1 [ SEEK ]   MESDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)MESDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59274
GTEX Portal (Tissue expression)MESDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1K6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1K6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1K6
Splice isoforms : SwissVarQ9H1K6
PhosPhoSitePlusQ9H1K6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MESDC1
DMDM Disease mutations59274
Blocks (Seattle)MESDC1
SuperfamilyQ9H1K6
Human Protein AtlasENSG00000140406
Peptide AtlasQ9H1K6
HPRD11300
IPIIPI00021719   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1K6
IntAct (EBI)Q9H1K6
FunCoupENSG00000140406
BioGRIDMESDC1
STRING (EMBL)MESDC1
ZODIACMESDC1
Ontologies - Pathways
QuickGOQ9H1K6
Ontology : AmiGOstress fiber  actin binding  
Ontology : EGO-EBIstress fiber  actin binding  
NDEx NetworkMESDC1
Atlas of Cancer Signalling NetworkMESDC1
Wikipedia pathwaysMESDC1
Orthology - Evolution
OrthoDB59274
GeneTree (enSembl)ENSG00000140406
Phylogenetic Trees/Animal Genes : TreeFamMESDC1
HOVERGENQ9H1K6
HOGENOMQ9H1K6
Homologs : HomoloGeneMESDC1
Homology/Alignments : Family Browser (UCSC)MESDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMESDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MESDC1
dbVarMESDC1
ClinVarMESDC1
1000_GenomesMESDC1 
Exome Variant ServerMESDC1
ExAC (Exome Aggregation Consortium)MESDC1 (select the gene name)
Genetic variants : HAPMAP59274
Genomic Variants (DGV)MESDC1 [DGVbeta]
DECIPHERMESDC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMESDC1 
Mutations
ICGC Data PortalMESDC1 
TCGA Data PortalMESDC1 
Broad Tumor PortalMESDC1
OASIS PortalMESDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMESDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMESDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MESDC1
DgiDB (Drug Gene Interaction Database)MESDC1
DoCM (Curated mutations)MESDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MESDC1 (select a term)
intoGenMESDC1
Cancer3DMESDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615466   
Orphanet
MedgenMESDC1
Genetic Testing Registry MESDC1
NextProtQ9H1K6 [Medical]
TSGene59274
GENETestsMESDC1
Target ValidationMESDC1
Huge Navigator MESDC1 [HugePedia]
snp3D : Map Gene to Disease59274
BioCentury BCIQMESDC1
ClinGenMESDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD59274
Chemical/Pharm GKB GenePA30760
Clinical trialMESDC1
Miscellaneous
canSAR (ICR)MESDC1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMESDC1
EVEXMESDC1
GoPubMedMESDC1
iHOPMESDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:17:46 CEST 2017

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