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METAP1D (methionyl aminopeptidase type 1D (mitochondrial))

Identity

Alias_symbol (synonym)MAP1D
Metap1l
Other aliasMAP 1D
MetAP 1D
HGNC (Hugo) METAP1D
LocusID (NCBI) 254042
Atlas_Id 51689
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 172864804 and ends at 172945587 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
METAP1D (2q31.1) / YAP1 (11q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)METAP1D   32583
Cards
Entrez_Gene (NCBI)METAP1D  254042  methionyl aminopeptidase type 1D (mitochondrial)
AliasesMAP; MAP1D; MetAP; Metap1l
GeneCards (Weizmann)METAP1D
Ensembl hg19 (Hinxton)ENSG00000172878 [Gene_View]  chr2:172864804-172945587 [Contig_View]  METAP1D [Vega]
Ensembl hg38 (Hinxton)ENSG00000172878 [Gene_View]  chr2:172864804-172945587 [Contig_View]  METAP1D [Vega]
ICGC DataPortalENSG00000172878
TCGA cBioPortalMETAP1D
AceView (NCBI)METAP1D
Genatlas (Paris)METAP1D
WikiGenes254042
SOURCE (Princeton)METAP1D
Genetics Home Reference (NIH)METAP1D
Genomic and cartography
GoldenPath hg19 (UCSC)METAP1D  -     chr2:172864804-172945587 +  2q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)METAP1D  -     2q31.1   [Description]    (hg38-Dec_2013)
EnsemblMETAP1D - 2q31.1 [CytoView hg19]  METAP1D - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBIMETAP1D [Mapview hg19]  METAP1D [Mapview hg38]
OMIM610267   
Gene and transcription
Genbank (Entrez)AK093827 AY374142 BC029123 BC113644 BC143913
RefSeq transcript (Entrez)NM_001322278 NM_001322279 NM_199227
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)METAP1D
Cluster EST : UnigeneHs.597025 [ NCBI ]
CGAP (NCI)Hs.597025
Alternative Splicing GalleryENSG00000172878
Gene ExpressionMETAP1D [ NCBI-GEO ]   METAP1D [ EBI - ARRAY_EXPRESS ]   METAP1D [ SEEK ]   METAP1D [ MEM ]
Gene Expression Viewer (FireBrowse)METAP1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254042
GTEX Portal (Tissue expression)METAP1D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UB28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UB28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UB28
Splice isoforms : SwissVarQ6UB28
PhosPhoSitePlusQ6UB28
Domaine pattern : Prosite (Expaxy)MAP_1 (PS00680)   
Domains : Interpro (EBI)Pept_M24_MAP    Pept_M24_structural-domain    Pept_M24A_MAP1   
Domain families : Pfam (Sanger)Peptidase_M24 (PF00557)   
Domain families : Pfam (NCBI)pfam00557   
Conserved Domain (NCBI)METAP1D
DMDM Disease mutations254042
Blocks (Seattle)METAP1D
SuperfamilyQ6UB28
Human Protein AtlasENSG00000172878
Peptide AtlasQ6UB28
HPRD17462
IPIIPI00874126   
Protein Interaction databases
DIP (DOE-UCLA)Q6UB28
IntAct (EBI)Q6UB28
FunCoupENSG00000172878
BioGRIDMETAP1D
STRING (EMBL)METAP1D
ZODIACMETAP1D
Ontologies - Pathways
QuickGOQ6UB28
Ontology : AmiGOaminopeptidase activity  mitochondrion  proteolysis  metalloexopeptidase activity  peptidyl-methionine modification  N-terminal protein amino acid modification  metal ion binding  
Ontology : EGO-EBIaminopeptidase activity  mitochondrion  proteolysis  metalloexopeptidase activity  peptidyl-methionine modification  N-terminal protein amino acid modification  metal ion binding  
NDEx NetworkMETAP1D
Atlas of Cancer Signalling NetworkMETAP1D
Wikipedia pathwaysMETAP1D
Orthology - Evolution
OrthoDB254042
GeneTree (enSembl)ENSG00000172878
Phylogenetic Trees/Animal Genes : TreeFamMETAP1D
HOVERGENQ6UB28
HOGENOMQ6UB28
Homologs : HomoloGeneMETAP1D
Homology/Alignments : Family Browser (UCSC)METAP1D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMETAP1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)METAP1D
dbVarMETAP1D
ClinVarMETAP1D
1000_GenomesMETAP1D 
Exome Variant ServerMETAP1D
ExAC (Exome Aggregation Consortium)METAP1D (select the gene name)
Genetic variants : HAPMAP254042
Genomic Variants (DGV)METAP1D [DGVbeta]
DECIPHER (Syndromes)2:172864804-172945587  ENSG00000172878
CONAN: Copy Number AnalysisMETAP1D 
Mutations
ICGC Data PortalMETAP1D 
TCGA Data PortalMETAP1D 
Broad Tumor PortalMETAP1D
OASIS PortalMETAP1D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMETAP1D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMETAP1D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch METAP1D
DgiDB (Drug Gene Interaction Database)METAP1D
DoCM (Curated mutations)METAP1D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)METAP1D (select a term)
intoGenMETAP1D
Cancer3DMETAP1D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610267   
Orphanet
MedgenMETAP1D
Genetic Testing Registry METAP1D
NextProtQ6UB28 [Medical]
TSGene254042
GENETestsMETAP1D
Huge Navigator METAP1D [HugePedia]
snp3D : Map Gene to Disease254042
BioCentury BCIQMETAP1D
ClinGenMETAP1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254042
Clinical trialMETAP1D
Miscellaneous
canSAR (ICR)METAP1D (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMETAP1D
EVEXMETAP1D
GoPubMedMETAP1D
iHOPMETAP1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:08:59 CEST 2017

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