Atlas of Genetics and Cytogenetics in Oncology and Haematology

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METRN (meteorin, glial cell differentiation regulator)

Identity

Alias_namesC16orf23
chromosome 16 open reading frame 23
Alias_symbol (synonym)MGC2601
Other aliasc380A1.2
HGNC (Hugo) METRN
LocusID (NCBI) 79006
Atlas_Id 68907
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 715173 and ends at 719655 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
METRN (16p13.3) / C1orf122 (1p34.3)METRN (16p13.3) / NR4A1 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)METRN   14151
Cards
Entrez_Gene (NCBI)METRN  79006  meteorin, glial cell differentiation regulator
AliasesC16orf23; c380A1.2
GeneCards (Weizmann)METRN
Ensembl hg19 (Hinxton)ENSG00000103260 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103260 [Gene_View]  ENSG00000103260 [Sequence]  chr16:715173-719655 [Contig_View]  METRN [Vega]
ICGC DataPortalENSG00000103260
TCGA cBioPortalMETRN
AceView (NCBI)METRN
Genatlas (Paris)METRN
WikiGenes79006
SOURCE (Princeton)METRN
Genetics Home Reference (NIH)METRN
Genomic and cartography
GoldenPath hg38 (UCSC)METRN  -     chr16:715173-719655 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)METRN  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathMETRN - 16p13.3 [CytoView hg19]  METRN - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000103260
Mapping of homologs : NCBIMETRN [Mapview hg19]  METRN [Mapview hg38]
OMIM610998   
Gene and transcription
Genbank (Entrez)AK057053 AK308711 AL360260 BC000662
RefSeq transcript (Entrez)NM_024042
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)METRN
Cluster EST : UnigeneHs.732288 [ NCBI ]
CGAP (NCI)Hs.732288
Alternative Splicing GalleryENSG00000103260
Gene ExpressionMETRN [ NCBI-GEO ]   METRN [ EBI - ARRAY_EXPRESS ]   METRN [ SEEK ]   METRN [ MEM ]
Gene Expression Viewer (FireBrowse)METRN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79006
GTEX Portal (Tissue expression)METRN
Human Protein AtlasENSG00000103260-METRN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJH8
Splice isoforms : SwissVarQ9UJH8
PhosPhoSitePlusQ9UJH8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)METRN
DMDM Disease mutations79006
Blocks (Seattle)METRN
SuperfamilyQ9UJH8
Human Protein Atlas [tissue]ENSG00000103260-METRN [tissue]
Peptide AtlasQ9UJH8
HPRD14388
IPIIPI00384225   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJH8
IntAct (EBI)Q9UJH8
FunCoupENSG00000103260
BioGRIDMETRN
STRING (EMBL)METRN
ZODIACMETRN
Ontologies - Pathways
QuickGOQ9UJH8
Ontology : AmiGOhormone activity  extracellular space  signal transduction  glial cell differentiation  positive regulation of axonogenesis  
Ontology : EGO-EBIhormone activity  extracellular space  signal transduction  glial cell differentiation  positive regulation of axonogenesis  
NDEx NetworkMETRN
Atlas of Cancer Signalling NetworkMETRN
Wikipedia pathwaysMETRN
Orthology - Evolution
OrthoDB79006
GeneTree (enSembl)ENSG00000103260
Phylogenetic Trees/Animal Genes : TreeFamMETRN
HOGENOMQ9UJH8
Homologs : HomoloGeneMETRN
Homology/Alignments : Family Browser (UCSC)METRN
Gene fusions - Rearrangements
Fusion : QuiverMETRN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMETRN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)METRN
dbVarMETRN
ClinVarMETRN
1000_GenomesMETRN 
Exome Variant ServerMETRN
ExAC (Exome Aggregation Consortium)ENSG00000103260
GNOMAD BrowserENSG00000103260
Varsome BrowserMETRN
Genetic variants : HAPMAP79006
Genomic Variants (DGV)METRN [DGVbeta]
DECIPHERMETRN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMETRN 
Mutations
ICGC Data PortalMETRN 
TCGA Data PortalMETRN 
Broad Tumor PortalMETRN
OASIS PortalMETRN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMETRN  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMETRN
Mutations and Diseases : HGMDMETRN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch METRN
DgiDB (Drug Gene Interaction Database)METRN
DoCM (Curated mutations)METRN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)METRN (select a term)
intoGenMETRN
Cancer3DMETRN(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610998   
Orphanet
DisGeNETMETRN
MedgenMETRN
Genetic Testing Registry METRN
NextProtQ9UJH8 [Medical]
TSGene79006
GENETestsMETRN
Target ValidationMETRN
Huge Navigator METRN [HugePedia]
snp3D : Map Gene to Disease79006
BioCentury BCIQMETRN
ClinGenMETRN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79006
Chemical/Pharm GKB GenePA25537
Clinical trialMETRN
Miscellaneous
canSAR (ICR)METRN (select the gene name)
DataMed IndexMETRN
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMETRN
EVEXMETRN
GoPubMedMETRN
iHOPMETRN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:51:58 CEST 2019
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