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METRNL (meteorin like, glial cell differentiation regulator)

Identity

Other alias-
HGNC (Hugo) METRNL
LocusID (NCBI) 284207
Atlas_Id 68908
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 83079691 and ends at 83095126 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM129B (9q33.3) / METRNL (17q25.3)METRNL (17q25.3) / AC087491.2 ()METRNL (17q25.3) / UBC (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

>TT WIDTH=15%>Genetic variants : HAPMAP
Nomenclature
HGNC (Hugo)METRNL   27584
Cards
Entrez_Gene (NCBI)METRNL  284207  meteorin like, glial cell differentiation regulator
Aliases
GeneCards (Weizmann)METRNL
Ensembl hg19 (Hinxton)ENSG00000176845 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176845 [Gene_View]  chr17:83079691-83095126 [Contig_View]  METRNL [Vega]
ICGC DataPortalENSG00000176845
TCGA cBioPortalMETRNL
AceView (NCBI)METRNL
Genatlas (Paris)METRNL
WikiGenes284207
SOURCE (Princeton)METRNL
Genetics Home Reference (NIH)METRNL
Genomic and cartography
GoldenPath hg38 (UCSC)METRNL  -     chr17:83079691-83095126 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)METRNL  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblMETRNL - 17q25.3 [CytoView hg19]  METRNL - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIMETRNL [Mapview hg19]  METRNL [Mapview hg38]
OMIM616241   
Gene and transcription
Genbank (Entrez)AF086149 AK093748 BC050568 BC082252 BC118558
RefSeq transcript (Entrez)NM_001004431
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187612
Consensus coding sequences : CCDS (NCBI)METRNL
Cluster EST : UnigeneHs.378821 [ NCBI ]
CGAP (NCI)Hs.378821
Alternative Splicing GalleryENSG00000176845
Gene ExpressionMETRNL [ NCBI-GEO ]   METRNL [ EBI - ARRAY_EXPRESS ]   METRNL [ SEEK ]   METRNL [ MEM ]
Gene Expression Viewer (FireBrowse)METRNL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284207
GTEX Portal (Tissue expression)METRNL
Human Protein AtlasENSG00000176845-METRNL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ641Q3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ641Q3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ641Q3
Splice isoforms : SwissVarQ641Q3
PhosPhoSitePlusQ641Q3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)METRNL
DMDM Disease mutations284207
Blocks (Seattle)METRNL
SuperfamilyQ641Q3
Human Protein Atlas [tissue]ENSG00000176845-METRNL [tissue]
Peptide AtlasQ641Q3
HPRD11255
IPIIPI00181079   
Protein Interaction databases
DIP (DOE-UCLA)Q641Q3
IntAct (EBI)Q641Q3
FunCoupENSG00000176845
BioGRIDMETRNL
STRING (EMBL)METRNL
ZODIACMETRNL
Ontologies - Pathways
QuickGOQ641Q3
Ontology : AmiGOmolecular_function  hormone activity  extracellular space  response to cold  response to muscle activity  fat cell differentiation  negative regulation of inflammatory response  brown fat cell differentiation  extracellular exosome  positive regulation of brown fat cell differentiation  positive regulation of energy homeostasis  
Ontology : EGO-EBImolecular_function  hormone activity  extracellular space  response to cold  response to muscle activity  fat cell differentiation  negative regulation of inflammatory response  brown fat cell differentiation  extracellular exosome  positive regulation of brown fat cell differentiation  positive regulation of energy homeostasis  
NDEx NetworkMETRNL
Atlas of Cancer Signalling NetworkMETRNL
Wikipedia pathwaysMETRNL
Orthology - Evolution
OrthoDB284207
GeneTree (enSembl)ENSG00000176845
Phylogenetic Trees/Animal Genes : TreeFamMETRNL
HOVERGENQ641Q3
HOGENOMQ641Q3
Homologs : HomoloGeneMETRNL
Homology/Alignments : Family Browser (UCSC)METRNL
Gene fusions - Rearrangements
Fusion: Tumor Portal METRNL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMETRNL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)METRNL
dbVarMETRNL
ClinVarMETRNL
1000_GenomesMETRNL 
Exome Variant ServerMETRNL
ExAC (Exome Aggregation Consortium)ENSG00000176845
GNOMAD BrowserENSG00000176845
284207
Genomic Variants (DGV)METRNL [DGVbeta]
DECIPHERMETRNL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMETRNL 
Mutations
ICGC Data PortalMETRNL 
TCGA Data PortalMETRNL 
Broad Tumor PortalMETRNL
OASIS PortalMETRNL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMETRNL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMETRNL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch METRNL
DgiDB (Drug Gene Interaction Database)METRNL
DoCM (Curated mutations)METRNL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)METRNL (select a term)
intoGenMETRNL
Cancer3DMETRNL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616241   
Orphanet
MedgenMETRNL
Genetic Testing Registry METRNL
NextProtQ641Q3 [Medical]
TSGene284207
GENETestsMETRNL
Target ValidationMETRNL
Huge Navigator METRNL [HugePedia]
snp3D : Map Gene to Disease284207
BioCentury BCIQMETRNL
ClinGenMETRNL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284207
Chemical/Pharm GKB GenePA134970048
Clinical trialMETRNL
Miscellaneous
canSAR (ICR)METRNL (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMETRNL
EVEXMETRNL
GoPubMedMETRNL
iHOPMETRNL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:12:33 CET 2017

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