Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

METTL13 (methyltransferase like 13)

Identity

Alias_namesKIAA0859
KIAA0859
Alias_symbol (synonym)CGI-01
Other alias5630401D24Rik
feat
HGNC (Hugo) METTL13
LocusID (NCBI) 51603
Atlas_Id 54450
Location 1q24.3  [Link to chromosome band 1q24]
Location_base_pair Starts at 171781621 and ends at 171797716 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
METTL13 (1q24.3) / DNM3 (1q24.3)METTL13 (1q24.3) / EIF4G3 (1p36.12)METTL13 1q24.3 / EIF4G3 1p36.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)METTL13   24248
Cards
Entrez_Gene (NCBI)METTL13  51603  methyltransferase like 13
Aliases5630401D24Rik; CGI-01; KIAA0859; feat
GeneCards (Weizmann)METTL13
Ensembl hg19 (Hinxton)ENSG00000010165 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000010165 [Gene_View]  chr1:171781621-171797716 [Contig_View]  METTL13 [Vega]
ICGC DataPortalENSG00000010165
TCGA cBioPortalMETTL13
AceView (NCBI)METTL13
Genatlas (Paris)METTL13
WikiGenes51603
SOURCE (Princeton)METTL13
Genetics Home Reference (NIH)METTL13
Genomic and cartography
GoldenPath hg38 (UCSC)METTL13  -     chr1:171781621-171797716 +  1q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)METTL13  -     1q24.3   [Description]    (hg19-Feb_2009)
EnsemblMETTL13 - 1q24.3 [CytoView hg19]  METTL13 - 1q24.3 [CytoView hg38]
Mapping of homologs : NCBIMETTL13 [Mapview hg19]  METTL13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB020666 AB242174 AB242175 AF132936 AK001172
RefSeq transcript (Entrez)NM_001007239 NM_014955 NM_015935
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)METTL13
Cluster EST : UnigeneHs.494705 [ NCBI ]
CGAP (NCI)Hs.494705
Alternative Splicing GalleryENSG00000010165
Gene ExpressionMETTL13 [ NCBI-GEO ]   METTL13 [ EBI - ARRAY_EXPRESS ]   METTL13 [ SEEK ]   METTL13 [ MEM ]
Gene Expression Viewer (FireBrowse)METTL13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51603
GTEX Portal (Tissue expression)METTL13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6R0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6R0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6R0
Splice isoforms : SwissVarQ8N6R0
PhosPhoSitePlusQ8N6R0
Domains : Interpro (EBI)Methyltransf_11    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltransf_11 (PF08241)   
Domain families : Pfam (NCBI)pfam08241   
Conserved Domain (NCBI)METTL13
DMDM Disease mutations51603
Blocks (Seattle)METTL13
SuperfamilyQ8N6R0
Human Protein AtlasENSG00000010165
Peptide AtlasQ8N6R0
HPRD13821
IPIIPI00409639   IPI00384061   IPI00479432   IPI00604631   IPI00514340   IPI00942442   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6R0
IntAct (EBI)Q8N6R0
FunCoupENSG00000010165
BioGRIDMETTL13
STRING (EMBL)METTL13
ZODIACMETTL13
Ontologies - Pathways
QuickGOQ8N6R0
Ontology : AmiGOprotein binding  methyltransferase activity  methylation  
Ontology : EGO-EBIprotein binding  methyltransferase activity  methylation  
NDEx NetworkMETTL13
Atlas of Cancer Signalling NetworkMETTL13
Wikipedia pathwaysMETTL13
Orthology - Evolution
OrthoDB51603
GeneTree (enSembl)ENSG00000010165
Phylogenetic Trees/Animal Genes : TreeFamMETTL13
HOVERGENQ8N6R0
HOGENOMQ8N6R0
Homologs : HomoloGeneMETTL13
Homology/Alignments : Family Browser (UCSC)METTL13
Gene fusions - Rearrangements
Fusion : MitelmanMETTL13/DNM3 [1q24.3/1q24.3]  
Fusion : MitelmanMETTL13/EIF4G3 [1q24.3/1p36.12]  [t(1;1)(p36;q24)]  
Fusion: TCGAMETTL13 1q24.3 EIF4G3 1p36.12 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMETTL13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)METTL13
dbVarMETTL13
ClinVarMETTL13
1000_GenomesMETTL13 
Exome Variant ServerMETTL13
ExAC (Exome Aggregation Consortium)METTL13 (select the gene name)
Genetic variants : HAPMAP51603
Genomic Variants (DGV)METTL13 [DGVbeta]
DECIPHERMETTL13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMETTL13 
Mutations
ICGC Data PortalMETTL13 
TCGA Data PortalMETTL13 
Broad Tumor PortalMETTL13
OASIS PortalMETTL13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMETTL13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMETTL13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch METTL13
DgiDB (Drug Gene Interaction Database)METTL13
DoCM (Curated mutations)METTL13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)METTL13 (select a term)
intoGenMETTL13
Cancer3DMETTL13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMETTL13
Genetic Testing Registry METTL13
NextProtQ8N6R0 [Medical]
TSGene51603
GENETestsMETTL13
Target ValidationMETTL13
Huge Navigator METTL13 [HugePedia]
snp3D : Map Gene to Disease51603
BioCentury BCIQMETTL13
ClinGenMETTL13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51603
Chemical/Pharm GKB GenePA164722256
Clinical trialMETTL13
Miscellaneous
canSAR (ICR)METTL13 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMETTL13
EVEXMETTL13
GoPubMedMETTL13
iHOPMETTL13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:17:48 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.