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METTL15 (methyltransferase like 15)

Identity

Alias_namesMETT5D1
methyltransferase 5 domain containing 1
Alias_symbol (synonym)FLJ33979
Other alias
HGNC (Hugo) METTL15
LocusID (NCBI) 196074
Atlas_Id 68913
Location 11p14.1  [Link to chromosome band 11p14]
Location_base_pair Starts at 28129798 and ends at 28355054 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SLC1A3 (5p13.2) / METTL15 (11p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)METTL15   26606
Cards
Entrez_Gene (NCBI)METTL15  196074  methyltransferase like 15
AliasesMETT5D1
GeneCards (Weizmann)METTL15
Ensembl hg19 (Hinxton)ENSG00000169519 [Gene_View]  chr11:28129798-28355054 [Contig_View]  METTL15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169519 [Gene_View]  chr11:28129798-28355054 [Contig_View]  METTL15 [Vega]
ICGC DataPortalENSG00000169519
TCGA cBioPortalMETTL15
AceView (NCBI)METTL15
Genatlas (Paris)METTL15
WikiGenes196074
SOURCE (Princeton)METTL15
Genetics Home Reference (NIH)METTL15
Genomic and cartography
GoldenPath hg19 (UCSC)METTL15  -     chr11:28129798-28355054 +  11p14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)METTL15  -     11p14.1   [Description]    (hg38-Dec_2013)
EnsemblMETTL15 - 11p14.1 [CytoView hg19]  METTL15 - 11p14.1 [CytoView hg38]
Mapping of homologs : NCBIMETTL15 [Mapview hg19]  METTL15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ011598 AJ131606 AK091298 AL832668 BC030997
RefSeq transcript (Entrez)NM_001113528 NM_001297775 NM_152636
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)METTL15
Cluster EST : UnigeneHs.684649 [ NCBI ]
CGAP (NCI)Hs.684649
Alternative Splicing GalleryENSG00000169519
Gene ExpressionMETTL15 [ NCBI-GEO ]   METTL15 [ EBI - ARRAY_EXPRESS ]   METTL15 [ SEEK ]   METTL15 [ MEM ]
Gene Expression Viewer (FireBrowse)METTL15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196074
GTEX Portal (Tissue expression)METTL15
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NJ78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NJ78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NJ78
Splice isoforms : SwissVarA6NJ78
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusA6NJ78
Domains : Interpro (EBI)RsmH    SAM-dep_MeTrfase_MraW_recog    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltransf_5 (PF01795)   
Domain families : Pfam (NCBI)pfam01795   
Conserved Domain (NCBI)METTL15
DMDM Disease mutations196074
Blocks (Seattle)METTL15
SuperfamilyA6NJ78
Human Protein AtlasENSG00000169519
Peptide AtlasA6NJ78
HPRD08750
IPIIPI00783001   IPI00641281   IPI00654846   IPI00384389   IPI00879252   IPI00879075   
Protein Interaction databases
DIP (DOE-UCLA)A6NJ78
IntAct (EBI)A6NJ78
FunCoupENSG00000169519
BioGRIDMETTL15
STRING (EMBL)METTL15
ZODIACMETTL15
Ontologies - Pathways
QuickGOA6NJ78
Ontology : AmiGOprotein binding  rRNA base methylation  rRNA (cytosine-N4-)-methyltransferase activity  
Ontology : EGO-EBIprotein binding  rRNA base methylation  rRNA (cytosine-N4-)-methyltransferase activity  
NDEx NetworkMETTL15
Atlas of Cancer Signalling NetworkMETTL15
Wikipedia pathwaysMETTL15
Orthology - Evolution
OrthoDB196074
GeneTree (enSembl)ENSG00000169519
Phylogenetic Trees/Animal Genes : TreeFamMETTL15
HOVERGENA6NJ78
HOGENOMA6NJ78
Homologs : HomoloGeneMETTL15
Homology/Alignments : Family Browser (UCSC)METTL15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMETTL15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)METTL15
dbVarMETTL15
ClinVarMETTL15
1000_GenomesMETTL15 
Exome Variant ServerMETTL15
ExAC (Exome Aggregation Consortium)METTL15 (select the gene name)
Genetic variants : HAPMAP196074
Genomic Variants (DGV)METTL15 [DGVbeta]
DECIPHER (Syndromes)11:28129798-28355054  ENSG00000169519
CONAN: Copy Number AnalysisMETTL15 
Mutations
ICGC Data PortalMETTL15 
TCGA Data PortalMETTL15 
Broad Tumor PortalMETTL15
OASIS PortalMETTL15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMETTL15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMETTL15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch METTL15
DgiDB (Drug Gene Interaction Database)METTL15
DoCM (Curated mutations)METTL15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)METTL15 (select a term)
intoGenMETTL15
Cancer3DMETTL15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMETTL15
Genetic Testing Registry METTL15
NextProtA6NJ78 [Medical]
TSGene196074
GENETestsMETTL15
Huge Navigator METTL15 [HugePedia]
snp3D : Map Gene to Disease196074
BioCentury BCIQMETTL15
ClinGenMETTL15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196074
Chemical/Pharm GKB GenePA142671458
Clinical trialMETTL15
Miscellaneous
canSAR (ICR)METTL15 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMETTL15
EVEXMETTL15
GoPubMedMETTL15
iHOPMETTL15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:28:04 CET 2017

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