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METTL17 (methyltransferase like 17)

Identity

Other aliasMETT11D1
HGNC (Hugo) METTL17
LocusID (NCBI) 64745
Atlas_Id 56641
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 21457965 and ends at 21465194 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
METTL17 (14q11.2) / FABP4 (8q21.13)METTL17 (14q11.2) / POLR1A (2p11.2)METTL17 (14q11.2) / STOML1 (15q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)METTL17   19280
Cards
Entrez_Gene (NCBI)METTL17  64745  methyltransferase like 17
AliasesMETT11D1
GeneCards (Weizmann)METTL17
Ensembl hg19 (Hinxton) [Gene_View]  chr14:21457965-21465194 [Contig_View]  METTL17 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:21457965-21465194 [Contig_View]  METTL17 [Vega]
TCGA cBioPortalMETTL17
AceView (NCBI)METTL17
Genatlas (Paris)METTL17
WikiGenes64745
SOURCE (Princeton)METTL17
Genetics Home Reference (NIH)METTL17
Genomic and cartography
GoldenPath hg19 (UCSC)METTL17  -     chr14:21457965-21465194 +  14q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)METTL17  -     14q11.2   [Description]    (hg38-Dec_2013)
EnsemblMETTL17 - 14q11.2 [CytoView hg19]  METTL17 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIMETTL17 [Mapview hg19]  METTL17 [Mapview hg38]
OMIM616091   
Gene and transcription
Genbank (Entrez)AF321002 AK024512 AK303484 AK304180 AK315999
RefSeq transcript (Entrez)NM_001029991 NM_001029992 NM_022734
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)METTL17
Cluster EST : UnigeneHs.512693 [ NCBI ]
CGAP (NCI)Hs.512693
Gene ExpressionMETTL17 [ NCBI-GEO ]   METTL17 [ EBI - ARRAY_EXPRESS ]   METTL17 [ SEEK ]   METTL17 [ MEM ]
Gene Expression Viewer (FireBrowse)METTL17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64745
GTEX Portal (Tissue expression)METTL17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7H0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7H0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7H0
Splice isoforms : SwissVarQ9H7H0
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusQ9H7H0
Domains : Interpro (EBI)Cyt_c_oxidase_assmbl_CtaG    Ribosomal_Rsm22_bac-type    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Rsm22 (PF09243)   
Domain families : Pfam (NCBI)pfam09243   
Conserved Domain (NCBI)METTL17
DMDM Disease mutations64745
Blocks (Seattle)METTL17
SuperfamilyQ9H7H0
Peptide AtlasQ9H7H0
IPIIPI00329663   IPI00876996   IPI00289084   IPI00908909   IPI00911033   IPI01025185   IPI01025017   IPI01026388   IPI01026301   IPI01024792   IPI01026518   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7H0
IntAct (EBI)Q9H7H0
BioGRIDMETTL17
STRING (EMBL)METTL17
ZODIACMETTL17
Ontologies - Pathways
QuickGOQ9H7H0
Ontology : AmiGOcopper ion binding  protein binding  nucleus  nucleoplasm  mitochondrion  ribosome  translation  methyltransferase activity  respiratory chain complex IV assembly  aerobic respiration  methylation  
Ontology : EGO-EBIcopper ion binding  protein binding  nucleus  nucleoplasm  mitochondrion  ribosome  translation  methyltransferase activity  respiratory chain complex IV assembly  aerobic respiration  methylation  
NDEx NetworkMETTL17
Atlas of Cancer Signalling NetworkMETTL17
Wikipedia pathwaysMETTL17
Orthology - Evolution
OrthoDB64745
Phylogenetic Trees/Animal Genes : TreeFamMETTL17
HOVERGENQ9H7H0
HOGENOMQ9H7H0
Homologs : HomoloGeneMETTL17
Homology/Alignments : Family Browser (UCSC)METTL17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMETTL17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)METTL17
dbVarMETTL17
ClinVarMETTL17
1000_GenomesMETTL17 
Exome Variant ServerMETTL17
ExAC (Exome Aggregation Consortium)METTL17 (select the gene name)
Genetic variants : HAPMAP64745
Genomic Variants (DGV)METTL17 [DGVbeta]
DECIPHER (Syndromes)14:21457965-21465194  
CONAN: Copy Number AnalysisMETTL17 
Mutations
ICGC Data PortalMETTL17 
TCGA Data PortalMETTL17 
Broad Tumor PortalMETTL17
OASIS PortalMETTL17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMETTL17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMETTL17
BioMutasearch METTL17
DgiDB (Drug Gene Interaction Database)METTL17
DoCM (Curated mutations)METTL17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)METTL17 (select a term)
intoGenMETTL17
Cancer3DMETTL17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616091   
Orphanet
MedgenMETTL17
Genetic Testing Registry METTL17
NextProtQ9H7H0 [Medical]
TSGene64745
GENETestsMETTL17
Huge Navigator METTL17 [HugePedia]
snp3D : Map Gene to Disease64745
BioCentury BCIQMETTL17
ClinGenMETTL17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64745
Chemical/Pharm GKB GenePA145008140
Clinical trialMETTL17
Miscellaneous
canSAR (ICR)METTL17 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMETTL17
EVEXMETTL17
GoPubMedMETTL17
iHOPMETTL17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:15:00 CET 2017

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