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METTL21C (methyltransferase like 21C)

Identity

Alias_namesC13orf39
chromosome 13 open reading frame 39
Alias_symbol (synonym)LOC196541
Other alias
HGNC (Hugo) METTL21C
LocusID (NCBI) 196541
Atlas_Id 68916
Location 13q33.1  [Link to chromosome band 13q33]
Location_base_pair Starts at 102685747 and ends at 102694521 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)METTL21C   33717
Cards
Entrez_Gene (NCBI)METTL21C  196541  methyltransferase like 21C
AliasesC13orf39
GeneCards (Weizmann)METTL21C
Ensembl hg19 (Hinxton)ENSG00000139780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139780 [Gene_View]  chr13:102685747-102694521 [Contig_View]  METTL21C [Vega]
ICGC DataPortalENSG00000139780
TCGA cBioPortalMETTL21C
AceView (NCBI)METTL21C
Genatlas (Paris)METTL21C
WikiGenes196541
SOURCE (Princeton)METTL21C
Genetics Home Reference (NIH)METTL21C
Genomic and cartography
GoldenPath hg38 (UCSC)METTL21C  -     chr13:102685747-102694521 -  13q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)METTL21C  -     13q33.1   [Description]    (hg19-Feb_2009)
EnsemblMETTL21C - 13q33.1 [CytoView hg19]  METTL21C - 13q33.1 [CytoView hg38]
Mapping of homologs : NCBIMETTL21C [Mapview hg19]  METTL21C [Mapview hg38]
OMIM615259   
Gene and transcription
Genbank (Entrez)BC132748 BC132750 BX089441 HQ258371
RefSeq transcript (Entrez)NM_001010977
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)METTL21C
Cluster EST : UnigeneHs.508623 [ NCBI ]
CGAP (NCI)Hs.508623
Alternative Splicing GalleryENSG00000139780
Gene ExpressionMETTL21C [ NCBI-GEO ]   METTL21C [ EBI - ARRAY_EXPRESS ]   METTL21C [ SEEK ]   METTL21C [ MEM ]
Gene Expression Viewer (FireBrowse)METTL21C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196541
GTEX Portal (Tissue expression)METTL21C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZV1
Splice isoforms : SwissVarQ5VZV1
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusQ5VZV1
Domains : Interpro (EBI)Methyltransf_16    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltransf_16 (PF10294)   
Domain families : Pfam (NCBI)pfam10294   
Conserved Domain (NCBI)METTL21C
DMDM Disease mutations196541
Blocks (Seattle)METTL21C
PDB (SRS)4MTL   
PDB (PDBSum)4MTL   
PDB (IMB)4MTL   
PDB (RSDB)4MTL   
Structural Biology KnowledgeBase4MTL   
SCOP (Structural Classification of Proteins)4MTL   
CATH (Classification of proteins structures)4MTL   
SuperfamilyQ5VZV1
Human Protein AtlasENSG00000139780
Peptide AtlasQ5VZV1
HPRD17315
IPIIPI00334870   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZV1
IntAct (EBI)Q5VZV1
FunCoupENSG00000139780
BioGRIDMETTL21C
STRING (EMBL)METTL21C
ZODIACMETTL21C
Ontologies - Pathways
QuickGOQ5VZV1
Ontology : AmiGOprotein binding  nucleus  protein methylation  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  
Ontology : EGO-EBIprotein binding  nucleus  protein methylation  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  
NDEx NetworkMETTL21C
Atlas of Cancer Signalling NetworkMETTL21C
Wikipedia pathwaysMETTL21C
Orthology - Evolution
OrthoDB196541
GeneTree (enSembl)ENSG00000139780
Phylogenetic Trees/Animal Genes : TreeFamMETTL21C
HOVERGENQ5VZV1
HOGENOMQ5VZV1
Homologs : HomoloGeneMETTL21C
Homology/Alignments : Family Browser (UCSC)METTL21C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMETTL21C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)METTL21C
dbVarMETTL21C
ClinVarMETTL21C
1000_GenomesMETTL21C 
Exome Variant ServerMETTL21C
ExAC (Exome Aggregation Consortium)METTL21C (select the gene name)
Genetic variants : HAPMAP196541
Genomic Variants (DGV)METTL21C [DGVbeta]
DECIPHERMETTL21C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMETTL21C 
Mutations
ICGC Data PortalMETTL21C 
TCGA Data PortalMETTL21C 
Broad Tumor PortalMETTL21C
OASIS PortalMETTL21C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMETTL21C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMETTL21C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch METTL21C
DgiDB (Drug Gene Interaction Database)METTL21C
DoCM (Curated mutations)METTL21C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)METTL21C (select a term)
intoGenMETTL21C
Cancer3DMETTL21C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615259   
Orphanet
MedgenMETTL21C
Genetic Testing Registry METTL21C
NextProtQ5VZV1 [Medical]
TSGene196541
GENETestsMETTL21C
Target ValidationMETTL21C
Huge Navigator METTL21C [HugePedia]
snp3D : Map Gene to Disease196541
BioCentury BCIQMETTL21C
ClinGenMETTL21C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196541
Chemical/Pharm GKB GenePA162378126
Clinical trialMETTL21C
Miscellaneous
canSAR (ICR)METTL21C (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMETTL21C
EVEXMETTL21C
GoPubMedMETTL21C
iHOPMETTL21C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:27:12 CEST 2017

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