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METTL23 (methyltransferase like 23)

Identity

Alias_namesC17orf95
chromosome 17 open reading frame 95
Alias_symbol (synonym)LOC124512
Other aliasMRT44
HGNC (Hugo) METTL23
LocusID (NCBI) 124512
Atlas_Id 68919
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 76726830 and ends at 76733881 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GSE1 (16q24.1) / METTL23 (17q25.1)HIST1H1D (6p22.2) / METTL23 (17q25.1)METTL23 (17q25.1) / METTL23 (17q25.1)
METTL23 (17q25.1) / MFSD11 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)METTL23   26988
Cards
Entrez_Gene (NCBI)METTL23  124512  methyltransferase like 23
AliasesC17orf95; MRT44
GeneCards (Weizmann)METTL23
Ensembl hg19 (Hinxton)ENSG00000181038 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181038 [Gene_View]  chr17:76726830-76733881 [Contig_View]  METTL23 [Vega]
ICGC DataPortalENSG00000181038
TCGA cBioPortalMETTL23
AceView (NCBI)METTL23
Genatlas (Paris)METTL23
WikiGenes124512
SOURCE (Princeton)METTL23
Genetics Home Reference (NIH)METTL23
Genomic and cartography
GoldenPath hg38 (UCSC)METTL23  -     chr17:76726830-76733881 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)METTL23  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblMETTL23 - 17q25.1 [CytoView hg19]  METTL23 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIMETTL23 [Mapview hg19]  METTL23 [Mapview hg38]
OMIM615262   615942   
Gene and transcription
Genbank (Entrez)AL522160 BC033998 BC045819 BC106939 BE567652
RefSeq transcript (Entrez)NM_001080510 NM_001206983 NM_001206984 NM_001206985 NM_001206986 NM_001206987 NM_001302703 NM_001302704 NM_001302705
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)METTL23
Cluster EST : UnigeneHs.74655 [ NCBI ]
CGAP (NCI)Hs.74655
Alternative Splicing GalleryENSG00000181038
Gene ExpressionMETTL23 [ NCBI-GEO ]   METTL23 [ EBI - ARRAY_EXPRESS ]   METTL23 [ SEEK ]   METTL23 [ MEM ]
Gene Expression Viewer (FireBrowse)METTL23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124512
GTEX Portal (Tissue expression)METTL23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XA0
Splice isoforms : SwissVarQ86XA0
PhosPhoSitePlusQ86XA0
Domains : Interpro (EBI)Methyltransf_16    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltransf_16 (PF10294)   
Domain families : Pfam (NCBI)pfam10294   
Conserved Domain (NCBI)METTL23
DMDM Disease mutations124512
Blocks (Seattle)METTL23
SuperfamilyQ86XA0
Human Protein AtlasENSG00000181038
Peptide AtlasQ86XA0
IPIIPI00411662   IPI00953900   
Protein Interaction databases
DIP (DOE-UCLA)Q86XA0
IntAct (EBI)Q86XA0
FunCoupENSG00000181038
BioGRIDMETTL23
STRING (EMBL)METTL23
ZODIACMETTL23
Ontologies - Pathways
QuickGOQ86XA0
Ontology : AmiGOcytoplasm  methyltransferase activity  integral component of membrane  methylation  
Ontology : EGO-EBIcytoplasm  methyltransferase activity  integral component of membrane  methylation  
NDEx NetworkMETTL23
Atlas of Cancer Signalling NetworkMETTL23
Wikipedia pathwaysMETTL23
Orthology - Evolution
OrthoDB124512
GeneTree (enSembl)ENSG00000181038
Phylogenetic Trees/Animal Genes : TreeFamMETTL23
HOVERGENQ86XA0
HOGENOMQ86XA0
Homologs : HomoloGeneMETTL23
Homology/Alignments : Family Browser (UCSC)METTL23
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMETTL23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)METTL23
dbVarMETTL23
ClinVarMETTL23
1000_GenomesMETTL23 
Exome Variant ServerMETTL23
ExAC (Exome Aggregation Consortium)METTL23 (select the gene name)
Genetic variants : HAPMAP124512
Genomic Variants (DGV)METTL23 [DGVbeta]
DECIPHERMETTL23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMETTL23 
Mutations
ICGC Data PortalMETTL23 
TCGA Data PortalMETTL23 
Broad Tumor PortalMETTL23
OASIS PortalMETTL23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMETTL23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMETTL23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch METTL23
DgiDB (Drug Gene Interaction Database)METTL23
DoCM (Curated mutations)METTL23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)METTL23 (select a term)
intoGenMETTL23
Cancer3DMETTL23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615262    615942   
Orphanet11804   
MedgenMETTL23
Genetic Testing Registry METTL23
NextProtQ86XA0 [Medical]
TSGene124512
GENETestsMETTL23
Target ValidationMETTL23
Huge Navigator METTL23 [HugePedia]
snp3D : Map Gene to Disease124512
BioCentury BCIQMETTL23
ClinGenMETTL23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124512
Chemical/Pharm GKB GenePA162378566
Clinical trialMETTL23
Miscellaneous
canSAR (ICR)METTL23 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMETTL23
EVEXMETTL23
GoPubMedMETTL23
iHOPMETTL23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:27:13 CEST 2017

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