Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

METTL2A (methyltransferase like 2A)

Identity

Alias_symbol (synonym)FLJ12760
METTL2
Other alias
HGNC (Hugo) METTL2A
LocusID (NCBI) 339175
Atlas_Id 68922
Location 17q23.2  [Link to chromosome band 17q23]
Location_base_pair Starts at 62423885 and ends at 62450093 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
METTL2A (17q23.2) / EFCAB3 (17q23.2)METTL2A (17q23.2) / IRGQ (19q13.31)METTL2A (17q23.2) / PNO1 (2p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)METTL2A   25755
Cards
Entrez_Gene (NCBI)METTL2A  339175  methyltransferase like 2A
AliasesMETTL2
GeneCards (Weizmann)METTL2A
Ensembl hg19 (Hinxton)ENSG00000087995 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000087995 [Gene_View]  chr17:62423885-62450093 [Contig_View]  METTL2A [Vega]
ICGC DataPortalENSG00000087995
TCGA cBioPortalMETTL2A
AceView (NCBI)METTL2A
Genatlas (Paris)METTL2A
WikiGenes339175
SOURCE (Princeton)METTL2A
Genetics Home Reference (NIH)METTL2A
Genomic and cartography
GoldenPath hg38 (UCSC)METTL2A  -     chr17:62423885-62450093 +  17q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)METTL2A  -     17q23.2   [Description]    (hg19-Feb_2009)
EnsemblMETTL2A - 17q23.2 [CytoView hg19]  METTL2A - 17q23.2 [CytoView hg38]
Mapping of homologs : NCBIMETTL2A [Mapview hg19]  METTL2A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161384 AF161385 AK000991 AK022822 BC006985
RefSeq transcript (Entrez)NM_001005372 NM_181725
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)METTL2A
Cluster EST : UnigeneHs.381204 [ NCBI ]
CGAP (NCI)Hs.381204
Alternative Splicing GalleryENSG00000087995
Gene ExpressionMETTL2A [ NCBI-GEO ]   METTL2A [ EBI - ARRAY_EXPRESS ]   METTL2A [ SEEK ]   METTL2A [ MEM ]
Gene Expression Viewer (FireBrowse)METTL2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339175
GTEX Portal (Tissue expression)METTL2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IZ6
Splice isoforms : SwissVarQ96IZ6
PhosPhoSitePlusQ96IZ6
Domains : Interpro (EBI)MeTrfase    SAM-dependent_MTases   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)METTL2A
DMDM Disease mutations339175
Blocks (Seattle)METTL2A
SuperfamilyQ96IZ6
Human Protein AtlasENSG00000087995
Peptide AtlasQ96IZ6
HPRD07795
IPIIPI00376351   IPI00785128   IPI00939400   IPI00383202   
Protein Interaction databases
DIP (DOE-UCLA)Q96IZ6
IntAct (EBI)Q96IZ6
FunCoupENSG00000087995
BioGRIDMETTL2A
STRING (EMBL)METTL2A
ZODIACMETTL2A
Ontologies - Pathways
QuickGOQ96IZ6
Ontology : AmiGOtRNA (cytosine) methyltransferase activity  tRNA methylation  
Ontology : EGO-EBItRNA (cytosine) methyltransferase activity  tRNA methylation  
NDEx NetworkMETTL2A
Atlas of Cancer Signalling NetworkMETTL2A
Wikipedia pathwaysMETTL2A
Orthology - Evolution
OrthoDB339175
GeneTree (enSembl)ENSG00000087995
Phylogenetic Trees/Animal Genes : TreeFamMETTL2A
HOVERGENQ96IZ6
HOGENOMQ96IZ6
Homologs : HomoloGeneMETTL2A
Homology/Alignments : Family Browser (UCSC)METTL2A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMETTL2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)METTL2A
dbVarMETTL2A
ClinVarMETTL2A
1000_GenomesMETTL2A 
Exome Variant ServerMETTL2A
ExAC (Exome Aggregation Consortium)METTL2A (select the gene name)
Genetic variants : HAPMAP339175
Genomic Variants (DGV)METTL2A [DGVbeta]
DECIPHERMETTL2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMETTL2A 
Mutations
ICGC Data PortalMETTL2A 
TCGA Data PortalMETTL2A 
Broad Tumor PortalMETTL2A
OASIS PortalMETTL2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMETTL2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMETTL2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch METTL2A
DgiDB (Drug Gene Interaction Database)METTL2A
DoCM (Curated mutations)METTL2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)METTL2A (select a term)
intoGenMETTL2A
Cancer3DMETTL2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMETTL2A
Genetic Testing Registry METTL2A
NextProtQ96IZ6 [Medical]
TSGene339175
GENETestsMETTL2A
Target ValidationMETTL2A
Huge Navigator METTL2A [HugePedia]
snp3D : Map Gene to Disease339175
BioCentury BCIQMETTL2A
ClinGenMETTL2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339175
Chemical/Pharm GKB GenePA143485532
Clinical trialMETTL2A
Miscellaneous
canSAR (ICR)METTL2A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMETTL2A
EVEXMETTL2A
GoPubMedMETTL2A
iHOPMETTL2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:27:14 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.