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METTL5 (methyltransferase like 5)

Identity

Alias_symbol (synonym)HSPC133
Other alias
HGNC (Hugo) METTL5
LocusID (NCBI) 29081
Atlas_Id 68925
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 170668267 and ends at 170681441 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)METTL5   25006
Cards
Entrez_Gene (NCBI)METTL5  29081  methyltransferase like 5
AliasesHSPC133
GeneCards (Weizmann)METTL5
Ensembl hg19 (Hinxton)ENSG00000138382 [Gene_View]  chr2:170668267-170681441 [Contig_View]  METTL5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138382 [Gene_View]  chr2:170668267-170681441 [Contig_View]  METTL5 [Vega]
ICGC DataPortalENSG00000138382
TCGA cBioPortalMETTL5
AceView (NCBI)METTL5
Genatlas (Paris)METTL5
WikiGenes29081
SOURCE (Princeton)METTL5
Genetics Home Reference (NIH)METTL5
Genomic and cartography
GoldenPath hg19 (UCSC)METTL5  -     chr2:170668267-170681441 -  2q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)METTL5  -     2q31.1   [Description]    (hg38-Dec_2013)
EnsemblMETTL5 - 2q31.1 [CytoView hg19]  METTL5 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBIMETTL5 [Mapview hg19]  METTL5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161482 AF201938 AK001321 AL523293 BC000921
RefSeq transcript (Entrez)NM_001293186 NM_001293187 NM_014168
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)METTL5
Cluster EST : UnigeneHs.470553 [ NCBI ]
CGAP (NCI)Hs.470553
Alternative Splicing GalleryENSG00000138382
Gene ExpressionMETTL5 [ NCBI-GEO ]   METTL5 [ EBI - ARRAY_EXPRESS ]   METTL5 [ SEEK ]   METTL5 [ MEM ]
Gene Expression Viewer (FireBrowse)METTL5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29081
GTEX Portal (Tissue expression)METTL5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRN9
Splice isoforms : SwissVarQ9NRN9
PhosPhoSitePlusQ9NRN9
Domaine pattern : Prosite (Expaxy)N6_MTASE (PS00092)   
Domains : Interpro (EBI)DNA_methylase_N6_adenine_CS    SAM-dependent_MTases    Small_mtfrase_dom   
Domain families : Pfam (Sanger)MTS (PF05175)   
Domain families : Pfam (NCBI)pfam05175   
Conserved Domain (NCBI)METTL5
DMDM Disease mutations29081
Blocks (Seattle)METTL5
SuperfamilyQ9NRN9
Human Protein AtlasENSG00000138382
Peptide AtlasQ9NRN9
IPIIPI00299888   IPI00165406   IPI00917041   IPI00917185   IPI00917315   IPI00917537   IPI01009379   IPI01012510   IPI01012100   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRN9
IntAct (EBI)Q9NRN9
FunCoupENSG00000138382
BioGRIDMETTL5
STRING (EMBL)METTL5
ZODIACMETTL5
Ontologies - Pathways
QuickGOQ9NRN9
Ontology : AmiGOnucleic acid binding  methyltransferase activity  methylation  
Ontology : EGO-EBInucleic acid binding  methyltransferase activity  methylation  
NDEx NetworkMETTL5
Atlas of Cancer Signalling NetworkMETTL5
Wikipedia pathwaysMETTL5
Orthology - Evolution
OrthoDB29081
GeneTree (enSembl)ENSG00000138382
Phylogenetic Trees/Animal Genes : TreeFamMETTL5
HOVERGENQ9NRN9
HOGENOMQ9NRN9
Homologs : HomoloGeneMETTL5
Homology/Alignments : Family Browser (UCSC)METTL5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMETTL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)METTL5
dbVarMETTL5
ClinVarMETTL5
1000_GenomesMETTL5 
Exome Variant ServerMETTL5
ExAC (Exome Aggregation Consortium)METTL5 (select the gene name)
Genetic variants : HAPMAP29081
Genomic Variants (DGV)METTL5 [DGVbeta]
DECIPHER (Syndromes)2:170668267-170681441  ENSG00000138382
CONAN: Copy Number AnalysisMETTL5 
Mutations
ICGC Data PortalMETTL5 
TCGA Data PortalMETTL5 
Broad Tumor PortalMETTL5
OASIS PortalMETTL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMETTL5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMETTL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch METTL5
DgiDB (Drug Gene Interaction Database)METTL5
DoCM (Curated mutations)METTL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)METTL5 (select a term)
intoGenMETTL5
Cancer3DMETTL5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMETTL5
Genetic Testing Registry METTL5
NextProtQ9NRN9 [Medical]
TSGene29081
GENETestsMETTL5
Huge Navigator METTL5 [HugePedia]
snp3D : Map Gene to Disease29081
BioCentury BCIQMETTL5
ClinGenMETTL5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29081
Chemical/Pharm GKB GenePA142671461
Clinical trialMETTL5
Miscellaneous
canSAR (ICR)METTL5 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMETTL5
EVEXMETTL5
GoPubMedMETTL5
iHOPMETTL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:28:07 CET 2017

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