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MEX3A (mex-3 RNA binding family member A)

Identity

Alias_namesRKHD4
ring finger and KH domain containing 4
mex-3 homolog A (C. elegans)
Alias_symbol (synonym)RNF162
Other aliasMEX-3A
HGNC (Hugo) MEX3A
LocusID (NCBI) 92312
Atlas_Id 47412
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156072013 and ends at 156081998 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MEX3A (1q22) / MEX3A (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MEX3A   33482
Cards
Entrez_Gene (NCBI)MEX3A  92312  mex-3 RNA binding family member A
AliasesMEX-3A; RKHD4; RNF162
GeneCards (Weizmann)MEX3A
Ensembl hg19 (Hinxton)ENSG00000254726 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254726 [Gene_View]  ENSG00000254726 [Sequence]  chr1:156072013-156081998 [Contig_View]  MEX3A [Vega]
ICGC DataPortalENSG00000254726
TCGA cBioPortalMEX3A
AceView (NCBI)MEX3A
Genatlas (Paris)MEX3A
WikiGenes92312
SOURCE (Princeton)MEX3A
Genetics Home Reference (NIH)MEX3A
Genomic and cartography
GoldenPath hg38 (UCSC)MEX3A  -     chr1:156072013-156081998 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEX3A  -     1q22   [Description]    (hg19-Feb_2009)
GoldenPathMEX3A - 1q22 [CytoView hg19]  MEX3A - 1q22 [CytoView hg38]
ImmunoBaseENSG00000254726
Mapping of homologs : NCBIMEX3A [Mapview hg19]  MEX3A [Mapview hg38]
OMIM611007   
Gene and transcription
Genbank (Entrez)AK024097 AK095491 AK125482 AY950677 BC033283
RefSeq transcript (Entrez)NM_001093725
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEX3A
Cluster EST : UnigeneHs.591496 [ NCBI ]
CGAP (NCI)Hs.591496
Alternative Splicing GalleryENSG00000254726
Gene ExpressionMEX3A [ NCBI-GEO ]   MEX3A [ EBI - ARRAY_EXPRESS ]   MEX3A [ SEEK ]   MEX3A [ MEM ]
Gene Expression Viewer (FireBrowse)MEX3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92312
GTEX Portal (Tissue expression)MEX3A
Human Protein AtlasENSG00000254726-MEX3A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L020   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L020  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L020
Splice isoforms : SwissVarA1L020
PhosPhoSitePlusA1L020
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1    KH_dom_type_1_sf    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)KH_1 (PF00013)   
Domain families : Pfam (NCBI)pfam00013   
Domain families : Smart (EMBL)KH (SM00322)  RING (SM00184)  
Conserved Domain (NCBI)MEX3A
DMDM Disease mutations92312
Blocks (Seattle)MEX3A
SuperfamilyA1L020
Human Protein Atlas [tissue]ENSG00000254726-MEX3A [tissue]
Peptide AtlasA1L020
IPIIPI00385217   
Protein Interaction databases
DIP (DOE-UCLA)A1L020
IntAct (EBI)A1L020
FunCoupENSG00000254726
BioGRIDMEX3A
STRING (EMBL)MEX3A
ZODIACMEX3A
Ontologies - Pathways
QuickGOA1L020
Ontology : AmiGOP-body  RNA binding  nucleus  cytosol  metal ion binding  
Ontology : EGO-EBIP-body  RNA binding  nucleus  cytosol  metal ion binding  
NDEx NetworkMEX3A
Atlas of Cancer Signalling NetworkMEX3A
Wikipedia pathwaysMEX3A
Orthology - Evolution
OrthoDB92312
GeneTree (enSembl)ENSG00000254726
Phylogenetic Trees/Animal Genes : TreeFamMEX3A
HOGENOMA1L020
Homologs : HomoloGeneMEX3A
Homology/Alignments : Family Browser (UCSC)MEX3A
Gene fusions - Rearrangements
Fusion : QuiverMEX3A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEX3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEX3A
dbVarMEX3A
ClinVarMEX3A
1000_GenomesMEX3A 
Exome Variant ServerMEX3A
ExAC (Exome Aggregation Consortium)ENSG00000254726
GNOMAD BrowserENSG00000254726
Varsome BrowserMEX3A
Genetic variants : HAPMAP92312
Genomic Variants (DGV)MEX3A [DGVbeta]
DECIPHERMEX3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEX3A 
Mutations
ICGC Data PortalMEX3A 
TCGA Data PortalMEX3A 
Broad Tumor PortalMEX3A
OASIS PortalMEX3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMEX3A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMEX3A
Mutations and Diseases : HGMDMEX3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MEX3A
DgiDB (Drug Gene Interaction Database)MEX3A
DoCM (Curated mutations)MEX3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEX3A (select a term)
intoGenMEX3A
Cancer3DMEX3A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611007   
Orphanet
DisGeNETMEX3A
MedgenMEX3A
Genetic Testing Registry MEX3A
NextProtA1L020 [Medical]
TSGene92312
GENETestsMEX3A
Target ValidationMEX3A
Huge Navigator MEX3A [HugePedia]
snp3D : Map Gene to Disease92312
BioCentury BCIQMEX3A
ClinGenMEX3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92312
Chemical/Pharm GKB GenePA162395812
Clinical trialMEX3A
Miscellaneous
canSAR (ICR)MEX3A (select the gene name)
DataMed IndexMEX3A
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMEX3A
EVEXMEX3A
GoPubMedMEX3A
iHOPMEX3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 26 18:16:49 CEST 2019

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