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MEX3B (mex-3 RNA binding family member B)

Identity

Alias_namesRKHD3
ring finger and KH domain containing 3
mex-3 homolog B (C. elegans)
Alias_symbol (synonym)DKFZp434J0617
RNF195
Other aliasMEX-3B
HGNC (Hugo) MEX3B
LocusID (NCBI) 84206
Atlas_Id 47358
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 82334119 and ends at 82338484 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MEX3B   25297
Cards
Entrez_Gene (NCBI)MEX3B  84206  mex-3 RNA binding family member B
AliasesMEX-3B; RKHD3; RNF195
GeneCards (Weizmann)MEX3B
Ensembl hg19 (Hinxton)ENSG00000183496 [Gene_View]  chr15:82334119-82338484 [Contig_View]  MEX3B [Vega]
Ensembl hg38 (Hinxton)ENSG00000183496 [Gene_View]  chr15:82334119-82338484 [Contig_View]  MEX3B [Vega]
ICGC DataPortalENSG00000183496
TCGA cBioPortalMEX3B
AceView (NCBI)MEX3B
Genatlas (Paris)MEX3B
WikiGenes84206
SOURCE (Princeton)MEX3B
Genetics Home Reference (NIH)MEX3B
Genomic and cartography
GoldenPath hg19 (UCSC)MEX3B  -     chr15:82334119-82338484 -  15q25.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MEX3B  -     15q25.2   [Description]    (hg38-Dec_2013)
EnsemblMEX3B - 15q25.2 [CytoView hg19]  MEX3B - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIMEX3B [Mapview hg19]  MEX3B [Mapview hg38]
OMIM611008   
Gene and transcription
Genbank (Entrez)AA442153 AB095929 AK094145 AK094633 AK131424
RefSeq transcript (Entrez)NM_032246
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)MEX3B
Cluster EST : UnigeneHs.745180 [ NCBI ]
CGAP (NCI)Hs.745180
Alternative Splicing GalleryENSG00000183496
Gene ExpressionMEX3B [ NCBI-GEO ]   MEX3B [ EBI - ARRAY_EXPRESS ]   MEX3B [ SEEK ]   MEX3B [ MEM ]
Gene Expression Viewer (FireBrowse)MEX3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84206
GTEX Portal (Tissue expression)MEX3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN04
Splice isoforms : SwissVarQ6ZN04
PhosPhoSitePlusQ6ZN04
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)KH_1 (PF00013)   
Domain families : Pfam (NCBI)pfam00013   
Domain families : Smart (EMBL)KH (SM00322)  RING (SM00184)  
Conserved Domain (NCBI)MEX3B
DMDM Disease mutations84206
Blocks (Seattle)MEX3B
SuperfamilyQ6ZN04
Human Protein AtlasENSG00000183496
Peptide AtlasQ6ZN04
HPRD15256
IPIIPI00300213   IPI00829592   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN04
IntAct (EBI)Q6ZN04
FunCoupENSG00000183496
BioGRIDMEX3B
STRING (EMBL)MEX3B
ZODIACMEX3B
Ontologies - Pathways
QuickGOQ6ZN04
Ontology : AmiGOcytoplasmic mRNA processing body  calcium ion binding  nucleus  protein phosphorylation  zinc ion binding  poly(A) RNA binding  protein autophosphorylation  
Ontology : EGO-EBIcytoplasmic mRNA processing body  calcium ion binding  nucleus  protein phosphorylation  zinc ion binding  poly(A) RNA binding  protein autophosphorylation  
NDEx NetworkMEX3B
Atlas of Cancer Signalling NetworkMEX3B
Wikipedia pathwaysMEX3B
Orthology - Evolution
OrthoDB84206
GeneTree (enSembl)ENSG00000183496
Phylogenetic Trees/Animal Genes : TreeFamMEX3B
HOVERGENQ6ZN04
HOGENOMQ6ZN04
Homologs : HomoloGeneMEX3B
Homology/Alignments : Family Browser (UCSC)MEX3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEX3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEX3B
dbVarMEX3B
ClinVarMEX3B
1000_GenomesMEX3B 
Exome Variant ServerMEX3B
ExAC (Exome Aggregation Consortium)MEX3B (select the gene name)
Genetic variants : HAPMAP84206
Genomic Variants (DGV)MEX3B [DGVbeta]
DECIPHER (Syndromes)15:82334119-82338484  ENSG00000183496
CONAN: Copy Number AnalysisMEX3B 
Mutations
ICGC Data PortalMEX3B 
TCGA Data PortalMEX3B 
Broad Tumor PortalMEX3B
OASIS PortalMEX3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMEX3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMEX3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MEX3B
DgiDB (Drug Gene Interaction Database)MEX3B
DoCM (Curated mutations)MEX3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEX3B (select a term)
intoGenMEX3B
Cancer3DMEX3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611008   
Orphanet
MedgenMEX3B
Genetic Testing Registry MEX3B
NextProtQ6ZN04 [Medical]
TSGene84206
GENETestsMEX3B
Huge Navigator MEX3B [HugePedia]
snp3D : Map Gene to Disease84206
BioCentury BCIQMEX3B
ClinGenMEX3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84206
Chemical/Pharm GKB GenePA162395820
Clinical trialMEX3B
Miscellaneous
canSAR (ICR)MEX3B (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMEX3B
EVEXMEX3B
GoPubMedMEX3B
iHOPMEX3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:09:01 CEST 2017

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