Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MEX3C (mex-3 RNA binding family member C)

Identity

Alias (NCBI)BM-013
MEX-3C
RKHD2
RNF194
HGNC (Hugo) MEX3C
HGNC Alias symbFLJ38871
RNF194
HGNC Previous nameRKHD2
HGNC Previous namering finger and KH domain containing 2
 mex-3 homolog C (C. elegans)
LocusID (NCBI) 51320
Atlas_Id 47496
Location 18q21.2  [Link to chromosome band 18q21]
Location_base_pair Starts at 51174550 and ends at 51197681 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)MEX3C   28040
Cards
Entrez_Gene (NCBI)MEX3C    mex-3 RNA binding family member C
AliasesBM-013; MEX-3C; RKHD2; RNF194
GeneCards (Weizmann)MEX3C
Ensembl hg19 (Hinxton)ENSG00000176624 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176624 [Gene_View]  ENSG00000176624 [Sequence]  chr18:51174550-51197681 [Contig_View]  MEX3C [Vega]
ICGC DataPortalENSG00000176624
TCGA cBioPortalMEX3C
AceView (NCBI)MEX3C
Genatlas (Paris)MEX3C
SOURCE (Princeton)MEX3C
Genetics Home Reference (NIH)MEX3C
Genomic and cartography
GoldenPath hg38 (UCSC)MEX3C  -     chr18:51174550-51197681 -  18q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEX3C  -     18q21.2   [Description]    (hg19-Feb_2009)
GoldenPathMEX3C - 18q21.2 [CytoView hg19]  MEX3C - 18q21.2 [CytoView hg38]
ImmunoBaseENSG00000176624
genome Data Viewer NCBIMEX3C [Mapview hg19]  
OMIM611005   
Gene and transcription
Genbank (Entrez)AF208855 AK096190 AL833519 AW079942 AY950679
RefSeq transcript (Entrez)NM_016626
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MEX3C
Alternative Splicing GalleryENSG00000176624
Gene ExpressionMEX3C [ NCBI-GEO ]   MEX3C [ EBI - ARRAY_EXPRESS ]   MEX3C [ SEEK ]   MEX3C [ MEM ]
Gene Expression Viewer (FireBrowse)MEX3C [ Firebrowse - Broad ]
GenevisibleExpression of MEX3C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51320
GTEX Portal (Tissue expression)MEX3C
Human Protein AtlasENSG00000176624-MEX3C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5U5Q3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5U5Q3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5U5Q3
Splice isoforms : SwissVarQ5U5Q3
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ5U5Q3
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1    KH_dom_type_1_sf    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)KH_1 (PF00013)   
Domain families : Pfam (NCBI)pfam00013   
Domain families : Smart (EMBL)KH (SM00322)  RING (SM00184)  
Conserved Domain (NCBI)MEX3C
Blocks (Seattle)MEX3C
PDB (RSDB)5WWW    5WWX    5WWZ    5ZI6   
PDB Europe5WWW    5WWX    5WWZ    5ZI6   
PDB (PDBSum)5WWW    5WWX    5WWZ    5ZI6   
PDB (IMB)5WWW    5WWX    5WWZ    5ZI6   
Structural Biology KnowledgeBase5WWW    5WWX    5WWZ    5ZI6   
SCOP (Structural Classification of Proteins)5WWW    5WWX    5WWZ    5ZI6   
CATH (Classification of proteins structures)5WWW    5WWX    5WWZ    5ZI6   
SuperfamilyQ5U5Q3
Human Protein Atlas [tissue]ENSG00000176624-MEX3C [tissue]
Peptide AtlasQ5U5Q3
HPRD15255
IPIIPI00790901   
Protein Interaction databases
DIP (DOE-UCLA)Q5U5Q3
IntAct (EBI)Q5U5Q3
BioGRIDMEX3C
STRING (EMBL)MEX3C
ZODIACMEX3C
Ontologies - Pathways
QuickGOQ5U5Q3
Ontology : AmiGOchondrocyte hypertrophy  RNA binding  RNA binding  protein binding  nucleus  cytoplasm  protein ubiquitination  regulation of fat cell differentiation  metal ion binding  ubiquitin protein ligase activity  energy homeostasis  
Ontology : EGO-EBIchondrocyte hypertrophy  RNA binding  RNA binding  protein binding  nucleus  cytoplasm  protein ubiquitination  regulation of fat cell differentiation  metal ion binding  ubiquitin protein ligase activity  energy homeostasis  
NDEx NetworkMEX3C
Atlas of Cancer Signalling NetworkMEX3C
Wikipedia pathwaysMEX3C
Orthology - Evolution
OrthoDB51320
GeneTree (enSembl)ENSG00000176624
Phylogenetic Trees/Animal Genes : TreeFamMEX3C
HOGENOMQ5U5Q3
Homologs : HomoloGeneMEX3C
Homology/Alignments : Family Browser (UCSC)MEX3C
Gene fusions - Rearrangements
Fusion : QuiverMEX3C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEX3C [hg38]
dbVarMEX3C
ClinVarMEX3C
MonarchMEX3C
1000_GenomesMEX3C 
Exome Variant ServerMEX3C
GNOMAD BrowserENSG00000176624
Varsome BrowserMEX3C
Genomic Variants (DGV)MEX3C [DGVbeta]
DECIPHERMEX3C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEX3C 
Mutations
ICGC Data PortalMEX3C 
TCGA Data PortalMEX3C 
Broad Tumor PortalMEX3C
OASIS PortalMEX3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMEX3C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMEX3C
Mutations and Diseases : HGMDMEX3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MEX3C
DgiDB (Drug Gene Interaction Database)MEX3C
DoCM (Curated mutations)MEX3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MEX3C (select a term)
intoGenMEX3C
Cancer3DMEX3C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611005   
Orphanet
DisGeNETMEX3C
MedgenMEX3C
Genetic Testing Registry MEX3C
NextProtQ5U5Q3 [Medical]
GENETestsMEX3C
Target ValidationMEX3C
Huge Navigator MEX3C [HugePedia]
ClinGenMEX3C
Clinical trials, drugs, therapy
MyCancerGenomeMEX3C
Protein Interactions : CTD
Pharm GKB GenePA162395821
PharosQ5U5Q3
Clinical trialMEX3C
Miscellaneous
canSAR (ICR)MEX3C (select the gene name)
HarmonizomeMEX3C
DataMed IndexMEX3C
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMEX3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:31:35 CET 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.