Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MEX3D (mex-3 RNA binding family member D)

Identity

Alias (NCBI)MEX-3D
MEX3
OK/SW-cl.4
RKHD1
RNF193
TINO
HGNC (Hugo) MEX3D
HGNC Alias symbTino
KIAA2031
OK/SW-cl.4
RNF193
HGNC Alias namebcl-2 ARE RNA binding protein
HGNC Previous nameRKHD1
HGNC Previous namering finger and KH domain containing 1
 mex-3 homolog D (C. elegans)
LocusID (NCBI) 399664
Atlas_Id 47199
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1554669 and ends at 1568058 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MEX3D (19p13.3) / DCTN6 (8p12)MEX3D 19p13.3 / DCTN6 8p12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MEX3D   16734
Cards
Entrez_Gene (NCBI)MEX3D    mex-3 RNA binding family member D
AliasesMEX-3D; MEX3; OK/SW-cl.4; RKHD1; 
RNF193; TINO
GeneCards (Weizmann)MEX3D
Ensembl hg19 (Hinxton)ENSG00000181588 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181588 [Gene_View]  ENSG00000181588 [Sequence]  chr19:1554669-1568058 [Contig_View]  MEX3D [Vega]
ICGC DataPortalENSG00000181588
TCGA cBioPortalMEX3D
AceView (NCBI)MEX3D
Genatlas (Paris)MEX3D
SOURCE (Princeton)MEX3D
Genetics Home Reference (NIH)MEX3D
Genomic and cartography
GoldenPath hg38 (UCSC)MEX3D  -     chr19:1554669-1568058 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MEX3D  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathMEX3D - 19p13.3 [CytoView hg19]  MEX3D - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000181588
Genome Data Viewer NCBIMEX3D [Mapview hg19]  
OMIM611009   
Gene and transcription
Genbank (Entrez)AB062435 AB107353 AF458084 AY950680 BC113384
RefSeq transcript (Entrez)NM_001174118 NM_203304
Consensus coding sequences : CCDS (NCBI)MEX3D
Gene ExpressionMEX3D [ NCBI-GEO ]   MEX3D [ EBI - ARRAY_EXPRESS ]   MEX3D [ SEEK ]   MEX3D [ MEM ]
Gene Expression Viewer (FireBrowse)MEX3D [ Firebrowse - Broad ]
GenevisibleExpression of MEX3D in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399664
GTEX Portal (Tissue expression)MEX3D
Human Protein AtlasENSG00000181588-MEX3D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XN8
PhosPhoSitePlusQ86XN8
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1    KH_dom_type_1_sf    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)KH_1 (PF00013)   
Domain families : Pfam (NCBI)pfam00013   
Domain families : Smart (EMBL)KH (SM00322)  
Conserved Domain (NCBI)MEX3D
PDB (RSDB)2DGR   
PDB Europe2DGR   
PDB (PDBSum)2DGR   
PDB (IMB)2DGR   
Structural Biology KnowledgeBase2DGR   
SCOP (Structural Classification of Proteins)2DGR   
CATH (Classification of proteins structures)2DGR   
SuperfamilyQ86XN8
AlphaFold pdb e-kbQ86XN8   
Human Protein Atlas [tissue]ENSG00000181588-MEX3D [tissue]
HPRD15254
Protein Interaction databases
DIP (DOE-UCLA)Q86XN8
IntAct (EBI)Q86XN8
BioGRIDMEX3D
STRING (EMBL)MEX3D
ZODIACMEX3D
Ontologies - Pathways
QuickGOQ86XN8
Ontology : AmiGORNA binding  nucleus  mRNA localization resulting in posttranscriptional regulation of gene expression  mRNA 3'-UTR AU-rich region binding  metal ion binding  perinuclear region of cytoplasm  mRNA destabilization  
Ontology : EGO-EBIRNA binding  nucleus  mRNA localization resulting in posttranscriptional regulation of gene expression  mRNA 3'-UTR AU-rich region binding  metal ion binding  perinuclear region of cytoplasm  mRNA destabilization  
NDEx NetworkMEX3D
Atlas of Cancer Signalling NetworkMEX3D
Wikipedia pathwaysMEX3D
Orthology - Evolution
OrthoDB399664
GeneTree (enSembl)ENSG00000181588
Phylogenetic Trees/Animal Genes : TreeFamMEX3D
Homologs : HomoloGeneMEX3D
Homology/Alignments : Family Browser (UCSC)MEX3D
Gene fusions - Rearrangements
Fusion : MitelmanMEX3D/DCTN6 [19p13.3/8p12]  
Fusion : QuiverMEX3D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMEX3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MEX3D
dbVarMEX3D
ClinVarMEX3D
MonarchMEX3D
1000_GenomesMEX3D 
Exome Variant ServerMEX3D
GNOMAD BrowserENSG00000181588
Varsome BrowserMEX3D
ACMGMEX3D variants
VarityQ86XN8
Genomic Variants (DGV)MEX3D [DGVbeta]
DECIPHERMEX3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMEX3D 
Mutations
ICGC Data PortalMEX3D 
TCGA Data PortalMEX3D 
Broad Tumor PortalMEX3D
OASIS PortalMEX3D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMEX3D  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMEX3D
Mutations and Diseases : HGMDMEX3D
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMEX3D
DgiDB (Drug Gene Interaction Database)MEX3D
DoCM (Curated mutations)MEX3D
CIViC (Clinical Interpretations of Variants in Cancer)MEX3D
Cancer3DMEX3D
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611009   
Orphanet
DisGeNETMEX3D
MedgenMEX3D
Genetic Testing Registry MEX3D
NextProtQ86XN8 [Medical]
GENETestsMEX3D
Target ValidationMEX3D
Huge Navigator MEX3D [HugePedia]
ClinGenMEX3D
Clinical trials, drugs, therapy
MyCancerGenomeMEX3D
Protein Interactions : CTDMEX3D
Pharm GKB GenePA162395829
PharosQ86XN8
Clinical trialMEX3D
Miscellaneous
canSAR (ICR)MEX3D
HarmonizomeMEX3D
DataMed IndexMEX3D
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMEX3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:18:23 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.