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MFAP1 (microfibrillar associated protein 1)

Identity

Otjeb alias-
HGNC (Hugo) MFAP1
LocusID (NCBI) 4236
Atlas_Id 68931
Location 15q15.3  [Link to chromosome band 15q15]
Location_base_pair Starts at 43804535 and ends at 43824753 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HMGB2 (4q34.1) / MFAP1 (15q15.3)MFAP1 (15q15.3) / MFAP1 (15q15.3)TRIM5 (11p15.4) / MFAP1 (15q15.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MFAP1   7032
Cards
Entrez_Gene (NCBI)MFAP1  4236  microfibrillar associated protein 1
Aliases
GeneCards (Weizmann)MFAP1
Ensembl hg19 (Hinxton)ENSG00000140259 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140259 [Gene_View]  chr15:43804535-43824753 [Contig_View]  MFAP1 [Vega]
ICGC DataPortalENSG00000140259
TCGA cBioPortalMFAP1
AceView (NCBI)MFAP1
Genatlas (Paris)MFAP1
WikiGenes4236
SOURCE (Princeton)MFAP1
Genetics Home Reference (NIH)MFAP1
Genomic and cartography
GoldenPath hg38 (UCSC)MFAP1  -     chr15:43804535-43824753 -  15q15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MFAP1  -     15q15.3   [Description]    (hg19-Feb_2009)
EnsemblMFAP1 - 15q15.3 [CytoView hg19]  MFAP1 - 15q15.3 [CytoView hg38]
Mapping of homologs : NCBIMFAP1 [Mapview hg19]  MFAP1 [Mapview hg38]
OMIM600215   
Gene and transcription
Genbank (Entrez)AK312867 BC023557 BC050742 BF981568 DQ893389
RefSeq transcript (Entrez)NM_005926
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MFAP1
Cluster EST : UnigeneHs.61418 [ NCBI ]
CGAP (NCI)Hs.61418
Alternative Splicing GalleryENSG00000140259
Gene ExpressionMFAP1 [ NCBI-GEO ]   MFAP1 [ EBI - ARRAY_EXPRESS ]   MFAP1 [ SEEK ]   MFAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)MFAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4236
GTEX Portal (Tissue expression)MFAP1
Human Protein AtlasENSG00000140259-MFAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55081   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP55081  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55081
Splice isoforms : SwissVarP55081
PhosPhoSitePlusP55081
Domains : Interpro (EBI)MFAP1_C   
Domain families : Pfam (Sanger)MFAP1 (PF06991)   
Domain families : Pfam (NCBI)pfam06991   
Conserved Domain (NCBI)MFAP1
DMDM Disease mutations4236
Blocks (Seattle)MFAP1
PDB (SRS)5F5S   
PDB (PDBSum)5F5S   
PDB (IMB)5F5S   
PDB (RSDB)5F5S   
Structural Biology KnowledgeBase5F5S   
SCOP (Structural Classification of Proteins)5F5S   
CATH (Classification of proteins structures)5F5S   
SuperfamilyP55081
Human Protein Atlas [tissue]ENSG00000140259-MFAP1 [tissue]
Peptide AtlasP55081
HPRD02569
IPIIPI00022790   
Protein Interaction databases
DIP (DOE-UCLA)P55081
IntAct (EBI)P55081
FunCoupENSG00000140259
BioGRIDMFAP1
STRING (EMBL)MFAP1
ZODIACMFAP1
Ontologies - Pathways
QuickGOP55081
Ontology : AmiGOmicrofibril  RNA binding  protein binding  extracellular region  nucleus  biological_process  
Ontology : EGO-EBImicrofibril  RNA binding  protein binding  extracellular region  nucleus  biological_process  
NDEx NetworkMFAP1
Atlas of Cancer Signalling NetworkMFAP1
Wikipedia pathwaysMFAP1
Orthology - Evolution
OrthoDB4236
GeneTree (enSembl)ENSG00000140259
Phylogenetic Trees/Animal Genes : TreeFamMFAP1
HOVERGENP55081
HOGENOMP55081
Homologs : HomoloGeneMFAP1
Homology/Alignments : Family Browser (UCSC)MFAP1
Gene fusions - Rearrangements
Fusion: Tumor Portal MFAP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMFAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MFAP1
dbVarMFAP1
ClinVarMFAP1
1000_GenomesMFAP1 
Exome Variant ServerMFAP1
ExAC (Exome Aggregation Consortium)ENSG00000140259
GNOMAD BrowserENSG00000140259
Genetic variants : HAPMAP4236
Genomic Variants (DGV)MFAP1 [DGVbeta]
DECIPHERMFAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMFAP1 
Mutations
ICGC Data PortalMFAP1 
TCGA Data PortalMFAP1 
Broad Tumor PortalMFAP1
OASIS PortalMFAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMFAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMFAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MFAP1
DgiDB (Drug Gene Interaction Database)MFAP1
DoCM (Curated mutations)MFAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MFAP1 (select a term)
intoGenMFAP1
Cancer3DMFAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600215   
Orphanet
MedgenMFAP1
Genetic Testing Registry MFAP1
NextProtP55081 [Medical]
TSGene4236
GENETestsMFAP1
Target ValidationMFAP1
Huge Navigator MFAP1 [HugePedia]
snp3D : Map Gene to Disease4236
BioCentury BCIQMFAP1
ClinGenMFAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4236
Chemical/Pharm GKB GenePA30768
Clinical trialMFAP1
Miscellaneous
canSAR (ICR)MFAP1 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMFAP1
EVEXMFAP1
GoPubMedMFAP1
iHOPMFAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:12:37 CET 2017

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