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MFAP2 (microfibrillar associated protein 2)

Identity

Alias_symbol (synonym)MAGP
MAGP-1
Other aliasMAGP1
HGNC (Hugo) MFAP2
LocusID (NCBI) 4237
Atlas_Id 41341
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16974504 and ends at 16981586 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MFAP2   7033
Cards
Entrez_Gene (NCBI)MFAP2  4237  microfibrillar associated protein 2
AliasesMAGP; MAGP-1; MAGP1
GeneCards (Weizmann)MFAP2
Ensembl hg19 (Hinxton)ENSG00000117122 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117122 [Gene_View]  chr1:16974504-16981586 [Contig_View]  MFAP2 [Vega]
ICGC DataPortalENSG00000117122
TCGA cBioPortalMFAP2
AceView (NCBI)MFAP2
Genatlas (Paris)MFAP2
WikiGenes4237
SOURCE (Princeton)MFAP2
Genetics Home Reference (NIH)MFAP2
Genomic and cartography
GoldenPath hg38 (UCSC)MFAP2  -     chr1:16974504-16981586 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MFAP2  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblMFAP2 - 1p36.13 [CytoView hg19]  MFAP2 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIMFAP2 [Mapview hg19]  MFAP2 [Mapview hg38]
OMIM156790   
Gene and transcription
Genbank (Entrez)AK222751 AK301655 AU280150 BC015039 BC028033
RefSeq transcript (Entrez)NM_001135247 NM_001135248 NM_002403 NM_017459
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MFAP2
Cluster EST : UnigeneHs.389137 [ NCBI ]
CGAP (NCI)Hs.389137
Alternative Splicing GalleryENSG00000117122
Gene ExpressionMFAP2 [ NCBI-GEO ]   MFAP2 [ EBI - ARRAY_EXPRESS ]   MFAP2 [ SEEK ]   MFAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)MFAP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4237
GTEX Portal (Tissue expression)MFAP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55001   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP55001  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55001
Splice isoforms : SwissVarP55001
PhosPhoSitePlusP55001
Domaine pattern : Prosite (Expaxy)SHKT (PS51670)   
Domains : Interpro (EBI)MAGP    ShKT_dom   
Domain families : Pfam (Sanger)MAGP (PF05507)    ShK (PF01549)   
Domain families : Pfam (NCBI)pfam05507    pfam01549   
Conserved Domain (NCBI)MFAP2
DMDM Disease mutations4237
Blocks (Seattle)MFAP2
SuperfamilyP55001
Human Protein AtlasENSG00000117122
Peptide AtlasP55001
HPRD01137
IPIIPI00022621   IPI00644827   
Protein Interaction databases
DIP (DOE-UCLA)P55001
IntAct (EBI)P55001
FunCoupENSG00000117122
BioGRIDMFAP2
STRING (EMBL)MFAP2
ZODIACMFAP2
Ontologies - Pathways
QuickGOP55001
Ontology : AmiGOmicrofibril  extracellular region  proteinaceous extracellular matrix  extracellular matrix organization  embryonic eye morphogenesis  post-embryonic eye morphogenesis  
Ontology : EGO-EBImicrofibril  extracellular region  proteinaceous extracellular matrix  extracellular matrix organization  embryonic eye morphogenesis  post-embryonic eye morphogenesis  
NDEx NetworkMFAP2
Atlas of Cancer Signalling NetworkMFAP2
Wikipedia pathwaysMFAP2
Orthology - Evolution
OrthoDB4237
GeneTree (enSembl)ENSG00000117122
Phylogenetic Trees/Animal Genes : TreeFamMFAP2
HOVERGENP55001
HOGENOMP55001
Homologs : HomoloGeneMFAP2
Homology/Alignments : Family Browser (UCSC)MFAP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMFAP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MFAP2
dbVarMFAP2
ClinVarMFAP2
1000_GenomesMFAP2 
Exome Variant ServerMFAP2
ExAC (Exome Aggregation Consortium)MFAP2 (select the gene name)
Genetic variants : HAPMAP4237
Genomic Variants (DGV)MFAP2 [DGVbeta]
DECIPHERMFAP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMFAP2 
Mutations
ICGC Data PortalMFAP2 
TCGA Data PortalMFAP2 
Broad Tumor PortalMFAP2
OASIS PortalMFAP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMFAP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMFAP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MFAP2
DgiDB (Drug Gene Interaction Database)MFAP2
DoCM (Curated mutations)MFAP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MFAP2 (select a term)
intoGenMFAP2
Cancer3DMFAP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM156790   
Orphanet
MedgenMFAP2
Genetic Testing Registry MFAP2
NextProtP55001 [Medical]
TSGene4237
GENETestsMFAP2
Huge Navigator MFAP2 [HugePedia]
snp3D : Map Gene to Disease4237
BioCentury BCIQMFAP2
ClinGenMFAP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4237
Chemical/Pharm GKB GenePA30769
Clinical trialMFAP2
Miscellaneous
canSAR (ICR)MFAP2 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMFAP2
EVEXMFAP2
GoPubMedMFAP2
iHOPMFAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:24:46 CEST 2017

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