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MFAP3 (microfibrillar associated protein 3)

Identity

Other alias-
HGNC (Hugo) MFAP3
LocusID (NCBI) 4238
Atlas_Id 68932
Location 5q33.2  [Link to chromosome band 5q33]
Location_base_pair Starts at 154038959 and ends at 154057454 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MFAP3 (5q33.2) / MFAP3 (5q33.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MFAP3   7034
Cards
Entrez_Gene (NCBI)MFAP3  4238  microfibrillar associated protein 3
Aliases
GeneCards (Weizmann)MFAP3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:154038959-154057454 [Contig_View]  MFAP3 [Vega]
TCGA cBioPortalMFAP3
AceView (NCBI)MFAP3
Genatlas (Paris)MFAP3
WikiGenes4238
SOURCE (Princeton)MFAP3
Genetics Home Reference (NIH)MFAP3
Genomic and cartography
GoldenPath hg38 (UCSC)MFAP3  -     chr5:154038959-154057454 +  5q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MFAP3  -     5q33.2   [Description]    (hg19-Feb_2009)
EnsemblMFAP3 - 5q33.2 [CytoView hg19]  MFAP3 - 5q33.2 [CytoView hg38]
Mapping of homologs : NCBIMFAP3 [Mapview hg19]  MFAP3 [Mapview hg38]
OMIM600491   
Gene and transcription
Genbank (Entrez)AK000358 AK296468 AK315573 AL037715 AL049404
RefSeq transcript (Entrez)NM_001135037 NM_001242336 NM_005927
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MFAP3
Cluster EST : UnigeneHs.432818 [ NCBI ]
CGAP (NCI)Hs.432818
Gene ExpressionMFAP3 [ NCBI-GEO ]   MFAP3 [ EBI - ARRAY_EXPRESS ]   MFAP3 [ SEEK ]   MFAP3 [ MEM ]
Gene Expression Viewer (FireBrowse)MFAP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4238
GTEX Portal (Tissue expression)MFAP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55082   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP55082  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55082
Splice isoforms : SwissVarP55082
PhosPhoSitePlusP55082
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Immunoglobulin   
Domain families : Pfam (Sanger)ig (PF00047)   
Domain families : Pfam (NCBI)pfam00047   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)MFAP3
DMDM Disease mutations4238
Blocks (Seattle)MFAP3
SuperfamilyP55082
Peptide AtlasP55082
HPRD02731
IPIIPI00022791   IPI00983736   IPI00914056   IPI00983126   IPI00977515   
Protein Interaction databases
DIP (DOE-UCLA)P55082
IntAct (EBI)P55082
BioGRIDMFAP3
STRING (EMBL)MFAP3
ZODIACMFAP3
Ontologies - Pathways
QuickGOP55082
Ontology : AmiGOextracellular region  plasma membrane  integral component of membrane  
Ontology : EGO-EBIextracellular region  plasma membrane  integral component of membrane  
NDEx NetworkMFAP3
Atlas of Cancer Signalling NetworkMFAP3
Wikipedia pathwaysMFAP3
Orthology - Evolution
OrthoDB4238
Phylogenetic Trees/Animal Genes : TreeFamMFAP3
HOVERGENP55082
HOGENOMP55082
Homologs : HomoloGeneMFAP3
Homology/Alignments : Family Browser (UCSC)MFAP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMFAP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MFAP3
dbVarMFAP3
ClinVarMFAP3
1000_GenomesMFAP3 
Exome Variant ServerMFAP3
ExAC (Exome Aggregation Consortium)MFAP3 (select the gene name)
Genetic variants : HAPMAP4238
Genomic Variants (DGV)MFAP3 [DGVbeta]
DECIPHERMFAP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMFAP3 
Mutations
ICGC Data PortalMFAP3 
TCGA Data PortalMFAP3 
Broad Tumor PortalMFAP3
OASIS PortalMFAP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMFAP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMFAP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MFAP3
DgiDB (Drug Gene Interaction Database)MFAP3
DoCM (Curated mutations)MFAP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MFAP3 (select a term)
intoGenMFAP3
Cancer3DMFAP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600491   
Orphanet
MedgenMFAP3
Genetic Testing Registry MFAP3
NextProtP55082 [Medical]
TSGene4238
GENETestsMFAP3
Target ValidationMFAP3
Huge Navigator MFAP3 [HugePedia]
snp3D : Map Gene to Disease4238
BioCentury BCIQMFAP3
ClinGenMFAP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4238
Chemical/Pharm GKB GenePA30770
Clinical trialMFAP3
Miscellaneous
canSAR (ICR)MFAP3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMFAP3
EVEXMFAP3
GoPubMedMFAP3
iHOPMFAP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:58 CEST 2017

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