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MFAP5 (microfibrillar associated protein 5)

Identity

Alias_symbol (synonym)MAGP2
MP25
Other aliasAAT9
MAGP-2
MFAP-5
HGNC (Hugo) MFAP5
LocusID (NCBI) 8076
Atlas_Id 51289
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 8645943 and ends at 8662888 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MFAP5   29673
Cards
Entrez_Gene (NCBI)MFAP5  8076  microfibrillar associated protein 5
AliasesAAT9; MAGP-2; MAGP2; MFAP-5; 
MP25
GeneCards (Weizmann)MFAP5
Ensembl hg19 (Hinxton)ENSG00000197614 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197614 [Gene_View]  chr12:8645943-8662888 [Contig_View]  MFAP5 [Vega]
ICGC DataPortalENSG00000197614
TCGA cBioPortalMFAP5
AceView (NCBI)MFAP5
Genatlas (Paris)MFAP5
WikiGenes8076
SOURCE (Princeton)MFAP5
Genetics Home Reference (NIH)MFAP5
Genomic and cartography
GoldenPath hg38 (UCSC)MFAP5  -     chr12:8645943-8662888 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MFAP5  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblMFAP5 - 12p13.31 [CytoView hg19]  MFAP5 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIMFAP5 [Mapview hg19]  MFAP5 [Mapview hg38]
OMIM601103   616166   
Gene and transcription
Genbank (Entrez)AI494006 AK124368 AK290585 AK299475 AK315807
RefSeq transcript (Entrez)NM_001297709 NM_001297710 NM_001297711 NM_001297712 NM_003480
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MFAP5
Cluster EST : UnigeneHs.512842 [ NCBI ]
CGAP (NCI)Hs.512842
Alternative Splicing GalleryENSG00000197614
Gene ExpressionMFAP5 [ NCBI-GEO ]   MFAP5 [ EBI - ARRAY_EXPRESS ]   MFAP5 [ SEEK ]   MFAP5 [ MEM ]
Gene Expression Viewer (FireBrowse)MFAP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8076
GTEX Portal (Tissue expression)MFAP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13361   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13361  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13361
Splice isoforms : SwissVarQ13361
PhosPhoSitePlusQ13361
Domains : Interpro (EBI)MAGP   
Domain families : Pfam (Sanger)MAGP (PF05507)   
Domain families : Pfam (NCBI)pfam05507   
Conserved Domain (NCBI)MFAP5
DMDM Disease mutations8076
Blocks (Seattle)MFAP5
SuperfamilyQ13361
Human Protein AtlasENSG00000197614
Peptide AtlasQ13361
HPRD03063
IPIIPI00012832   IPI00902476   IPI00796058   IPI01011857   IPI01013420   IPI01010902   IPI00796687   IPI01011363   IPI01010896   IPI01010537   
Protein Interaction databases
DIP (DOE-UCLA)Q13361
IntAct (EBI)Q13361
FunCoupENSG00000197614
BioGRIDMFAP5
STRING (EMBL)MFAP5
ZODIACMFAP5
Ontologies - Pathways
QuickGOQ13361
Ontology : AmiGOmicrofibril  extracellular matrix structural constituent  extracellular region  proteinaceous extracellular matrix  extracellular space  extracellular matrix organization  definitive hemopoiesis  supramolecular fiber organization  
Ontology : EGO-EBImicrofibril  extracellular matrix structural constituent  extracellular region  proteinaceous extracellular matrix  extracellular space  extracellular matrix organization  definitive hemopoiesis  supramolecular fiber organization  
NDEx NetworkMFAP5
Atlas of Cancer Signalling NetworkMFAP5
Wikipedia pathwaysMFAP5
Orthology - Evolution
OrthoDB8076
GeneTree (enSembl)ENSG00000197614
Phylogenetic Trees/Animal Genes : TreeFamMFAP5
HOVERGENQ13361
HOGENOMQ13361
Homologs : HomoloGeneMFAP5
Homology/Alignments : Family Browser (UCSC)MFAP5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMFAP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MFAP5
dbVarMFAP5
ClinVarMFAP5
1000_GenomesMFAP5 
Exome Variant ServerMFAP5
ExAC (Exome Aggregation Consortium)MFAP5 (select the gene name)
Genetic variants : HAPMAP8076
Genomic Variants (DGV)MFAP5 [DGVbeta]
DECIPHERMFAP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMFAP5 
Mutations
ICGC Data PortalMFAP5 
TCGA Data PortalMFAP5 
Broad Tumor PortalMFAP5
OASIS PortalMFAP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMFAP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMFAP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MFAP5
DgiDB (Drug Gene Interaction Database)MFAP5
DoCM (Curated mutations)MFAP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MFAP5 (select a term)
intoGenMFAP5
Cancer3DMFAP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601103    616166   
Orphanet12138   
MedgenMFAP5
Genetic Testing Registry MFAP5
NextProtQ13361 [Medical]
TSGene8076
GENETestsMFAP5
Target ValidationMFAP5
Huge Navigator MFAP5 [HugePedia]
snp3D : Map Gene to Disease8076
BioCentury BCIQMFAP5
ClinGenMFAP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8076
Chemical/Pharm GKB GenePA134915148
Clinical trialMFAP5
Miscellaneous
canSAR (ICR)MFAP5 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMFAP5
EVEXMFAP5
GoPubMedMFAP5
iHOPMFAP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:42:52 CEST 2017

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