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MFSD1 (major facilitator superfamily domain containing 1)

Identity

Alias_symbol (synonym)FLJ14153
UG0581B09
Other aliasSMAP4
HGNC (Hugo) MFSD1
LocusID (NCBI) 64747
Atlas_Id 68936
Location 3q25.32  [Link to chromosome band 3q25]
Location_base_pair Starts at 158801926 and ends at 158829719 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MFSD1 (3q25.32) / GFM1 (3q25.32)MFSD1 (3q25.32) / RSRC1 (3q25.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MFSD1   25874
Cards
Entrez_Gene (NCBI)MFSD1  64747  major facilitator superfamily domain containing 1
AliasesSMAP4
GeneCards (Weizmann)MFSD1
Ensembl hg19 (Hinxton)ENSG00000118855 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118855 [Gene_View]  chr3:158801926-158829719 [Contig_View]  MFSD1 [Vega]
ICGC DataPortalENSG00000118855
TCGA cBioPortalMFSD1
AceView (NCBI)MFSD1
Genatlas (Paris)MFSD1
WikiGenes64747
SOURCE (Princeton)MFSD1
Genetics Home Reference (NIH)MFSD1
Genomic and cartography
GoldenPath hg38 (UCSC)MFSD1  -     chr3:158801926-158829719 +  3q25.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MFSD1  -     3q25.32   [Description]    (hg19-Feb_2009)
EnsemblMFSD1 - 3q25.32 [CytoView hg19]  MFSD1 - 3q25.32 [CytoView hg38]
Mapping of homologs : NCBIMFSD1 [Mapview hg19]  MFSD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB014732 AF351617 AK023478 AK024215 AK294628
RefSeq transcript (Entrez)NM_001167903 NM_001289406 NM_001289407 NM_022736
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MFSD1
Cluster EST : UnigeneHs.58663 [ NCBI ]
CGAP (NCI)Hs.58663
Alternative Splicing GalleryENSG00000118855
Gene ExpressionMFSD1 [ NCBI-GEO ]   MFSD1 [ EBI - ARRAY_EXPRESS ]   MFSD1 [ SEEK ]   MFSD1 [ MEM ]
Gene Expression Viewer (FireBrowse)MFSD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64747
GTEX Portal (Tissue expression)MFSD1
Human Protein AtlasENSG00000118855-MFSD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3U5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3U5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3U5
Splice isoforms : SwissVarQ9H3U5
PhosPhoSitePlusQ9H3U5
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)MFSD1
DMDM Disease mutations64747
Blocks (Seattle)MFSD1
SuperfamilyQ9H3U5
Human Protein Atlas [tissue]ENSG00000118855-MFSD1 [tissue]
Peptide AtlasQ9H3U5
HPRD07851
IPIIPI00797353   IPI00747136   IPI00908572   IPI00937543   IPI00942906   IPI00967810   IPI00946214   IPI00945260   IPI00945186   IPI00947090   IPI00946028   IPI00945367   IPI00945238   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3U5
IntAct (EBI)Q9H3U5
FunCoupENSG00000118855
BioGRIDMFSD1
STRING (EMBL)MFSD1
ZODIACMFSD1
Ontologies - Pathways
QuickGOQ9H3U5
Ontology : AmiGOintegral component of membrane  transmembrane transport  
Ontology : EGO-EBIintegral component of membrane  transmembrane transport  
NDEx NetworkMFSD1
Atlas of Cancer Signalling NetworkMFSD1
Wikipedia pathwaysMFSD1
Orthology - Evolution
OrthoDB64747
GeneTree (enSembl)ENSG00000118855
Phylogenetic Trees/Animal Genes : TreeFamMFSD1
HOVERGENQ9H3U5
HOGENOMQ9H3U5
Homologs : HomoloGeneMFSD1
Homology/Alignments : Family Browser (UCSC)MFSD1
Gene fusions - Rearrangements
Tumor Fusion PortalMFSD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMFSD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MFSD1
dbVarMFSD1
ClinVarMFSD1
1000_GenomesMFSD1 
Exome Variant ServerMFSD1
ExAC (Exome Aggregation Consortium)ENSG00000118855
GNOMAD BrowserENSG00000118855
Genetic variants : HAPMAP64747
Genomic Variants (DGV)MFSD1 [DGVbeta]
DECIPHERMFSD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMFSD1 
Mutations
ICGC Data PortalMFSD1 
TCGA Data PortalMFSD1 
Broad Tumor PortalMFSD1
OASIS PortalMFSD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMFSD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMFSD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MFSD1
DgiDB (Drug Gene Interaction Database)MFSD1
DoCM (Curated mutations)MFSD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MFSD1 (select a term)
intoGenMFSD1
Cancer3DMFSD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMFSD1
MedgenMFSD1
Genetic Testing Registry MFSD1
NextProtQ9H3U5 [Medical]
TSGene64747
GENETestsMFSD1
Target ValidationMFSD1
Huge Navigator MFSD1 [HugePedia]
snp3D : Map Gene to Disease64747
BioCentury BCIQMFSD1
ClinGenMFSD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64747
Chemical/Pharm GKB GenePA134947356
Clinical trialMFSD1
Miscellaneous
canSAR (ICR)MFSD1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMFSD1
EVEXMFSD1
GoPubMedMFSD1
iHOPMFSD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:08:17 CET 2017

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