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MFSD10 (major facilitator superfamily domain containing 10)

Identity

Alias_symbol (synonym)TETRAN
IT10C3
Other aliasTETTRAN
HGNC (Hugo) MFSD10
LocusID (NCBI) 10227
Atlas_Id 68937
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 2930561 and ends at 2934237 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MFSD10 (4p16.3) / PDXDC1 (16p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MFSD10   16894
Cards
Entrez_Gene (NCBI)MFSD10  10227  major facilitator superfamily domain containing 10
AliasesTETRAN; TETTRAN
GeneCards (Weizmann)MFSD10
Ensembl hg19 (Hinxton)ENSG00000109736 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109736 [Gene_View]  chr4:2930561-2934237 [Contig_View]  MFSD10 [Vega]
ICGC DataPortalENSG00000109736
TCGA cBioPortalMFSD10
AceView (NCBI)MFSD10
Genatlas (Paris)MFSD10
WikiGenes10227
SOURCE (Princeton)MFSD10
Genetics Home Reference (NIH)MFSD10
Genomic and cartography
GoldenPath hg38 (UCSC)MFSD10  -     chr4:2930561-2934237 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MFSD10  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblMFSD10 - 4p16.3 [CytoView hg19]  MFSD10 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIMFSD10 [Mapview hg19]  MFSD10 [Mapview hg38]
OMIM610977   
Gene and transcription
Genbank (Entrez)BC001502 BC014979 BC023537 BI769550 BX359190
RefSeq transcript (Entrez)NM_001120 NM_001146069
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MFSD10
Cluster EST : UnigeneHs.632581 [ NCBI ]
CGAP (NCI)Hs.632581
Alternative Splicing GalleryENSG00000109736
Gene ExpressionMFSD10 [ NCBI-GEO ]   MFSD10 [ EBI - ARRAY_EXPRESS ]   MFSD10 [ SEEK ]   MFSD10 [ MEM ]
Gene Expression Viewer (FireBrowse)MFSD10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10227
GTEX Portal (Tissue expression)MFSD10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14728   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14728  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14728
Splice isoforms : SwissVarQ14728
PhosPhoSitePlusQ14728
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)MFSD10
DMDM Disease mutations10227
Blocks (Seattle)MFSD10
SuperfamilyQ14728
Human Protein AtlasENSG00000109736
Peptide AtlasQ14728
HPRD10265
IPIIPI00103940   IPI00964738   IPI00964399   IPI00965738   IPI00965243   IPI00963870   
Protein Interaction databases
DIP (DOE-UCLA)Q14728
IntAct (EBI)Q14728
FunCoupENSG00000109736
BioGRIDMFSD10
STRING (EMBL)MFSD10
ZODIACMFSD10
Ontologies - Pathways
QuickGOQ14728
Ontology : AmiGOtransport  apoptotic process  tetracycline transporter activity  organic anion transmembrane transporter activity  tetracycline transport  integral component of membrane  cytoplasmic vesicle membrane  brush border membrane  sodium-independent organic anion transport  transmembrane transport  
Ontology : EGO-EBItransport  apoptotic process  tetracycline transporter activity  organic anion transmembrane transporter activity  tetracycline transport  integral component of membrane  cytoplasmic vesicle membrane  brush border membrane  sodium-independent organic anion transport  transmembrane transport  
NDEx NetworkMFSD10
Atlas of Cancer Signalling NetworkMFSD10
Wikipedia pathwaysMFSD10
Orthology - Evolution
OrthoDB10227
GeneTree (enSembl)ENSG00000109736
Phylogenetic Trees/Animal Genes : TreeFamMFSD10
HOVERGENQ14728
HOGENOMQ14728
Homologs : HomoloGeneMFSD10
Homology/Alignments : Family Browser (UCSC)MFSD10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMFSD10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MFSD10
dbVarMFSD10
ClinVarMFSD10
1000_GenomesMFSD10 
Exome Variant ServerMFSD10
ExAC (Exome Aggregation Consortium)MFSD10 (select the gene name)
Genetic variants : HAPMAP10227
Genomic Variants (DGV)MFSD10 [DGVbeta]
DECIPHERMFSD10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMFSD10 
Mutations
ICGC Data PortalMFSD10 
TCGA Data PortalMFSD10 
Broad Tumor PortalMFSD10
OASIS PortalMFSD10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMFSD10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMFSD10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MFSD10
DgiDB (Drug Gene Interaction Database)MFSD10
DoCM (Curated mutations)MFSD10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MFSD10 (select a term)
intoGenMFSD10
Cancer3DMFSD10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610977   
Orphanet
MedgenMFSD10
Genetic Testing Registry MFSD10
NextProtQ14728 [Medical]
TSGene10227
GENETestsMFSD10
Target ValidationMFSD10
Huge Navigator MFSD10 [HugePedia]
snp3D : Map Gene to Disease10227
BioCentury BCIQMFSD10
ClinGenMFSD10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10227
Chemical/Pharm GKB GenePA162395840
Clinical trialMFSD10
Miscellaneous
canSAR (ICR)MFSD10 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMFSD10
EVEXMFSD10
GoPubMedMFSD10
iHOPMFSD10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:25:59 CEST 2017

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