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MFSD12 (major facilitator superfamily domain containing 12)

Identity

Alias_namesC19orf28
chromosome 19 open reading frame 28
Alias_symbol (synonym)MGC20700
PP3501
Other alias
HGNC (Hugo) MFSD12
LocusID (NCBI) 126321
Atlas_Id 56581
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 3544197 and ends at 3557582 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHURC1 (14q23.3) / MFSD12 (19p13.3)MFSD12 (19p13.3) / MFSD12 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MFSD12   28299
Cards
Entrez_Gene (NCBI)MFSD12  126321  major facilitator superfamily domain containing 12
AliasesC19orf28; PP3501
GeneCards (Weizmann)MFSD12
Ensembl hg19 (Hinxton)ENSG00000161091 [Gene_View]  chr19:3544197-3557582 [Contig_View]  MFSD12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161091 [Gene_View]  chr19:3544197-3557582 [Contig_View]  MFSD12 [Vega]
ICGC DataPortalENSG00000161091
TCGA cBioPortalMFSD12
AceView (NCBI)MFSD12
Genatlas (Paris)MFSD12
WikiGenes126321
SOURCE (Princeton)MFSD12
Genetics Home Reference (NIH)MFSD12
Genomic and cartography
GoldenPath hg19 (UCSC)MFSD12  -     chr19:3544197-3557582 -  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MFSD12  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblMFSD12 - 19p13.3 [CytoView hg19]  MFSD12 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIMFSD12 [Mapview hg19]  MFSD12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001042680 NM_001287529 NM_021731 NM_174983
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MFSD12
Cluster EST : UnigeneHs.656901 [ NCBI ]
CGAP (NCI)Hs.656901
Alternative Splicing GalleryENSG00000161091
Gene ExpressionMFSD12 [ NCBI-GEO ]   MFSD12 [ EBI - ARRAY_EXPRESS ]   MFSD12 [ SEEK ]   MFSD12 [ MEM ]
Gene Expression Viewer (FireBrowse)MFSD12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126321
GTEX Portal (Tissue expression)MFSD12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUT3
Splice isoforms : SwissVarQ6NUT3
PhosPhoSitePlusQ6NUT3
Domains : Interpro (EBI)MFS_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MFSD12
DMDM Disease mutations126321
Blocks (Seattle)MFSD12
SuperfamilyQ6NUT3
Human Protein AtlasENSG00000161091
Peptide AtlasQ6NUT3
HPRD12704
IPIIPI00783894   IPI00166640   IPI00307564   IPI00783916   IPI00783436   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUT3
IntAct (EBI)Q6NUT3
FunCoupENSG00000161091
BioGRIDMFSD12
STRING (EMBL)MFSD12
ZODIACMFSD12
Ontologies - Pathways
QuickGOQ6NUT3
Ontology : AmiGOlysosomal membrane  transport  integral component of membrane  
Ontology : EGO-EBIlysosomal membrane  transport  integral component of membrane  
NDEx NetworkMFSD12
Atlas of Cancer Signalling NetworkMFSD12
Wikipedia pathwaysMFSD12
Orthology - Evolution
OrthoDB126321
GeneTree (enSembl)ENSG00000161091
Phylogenetic Trees/Animal Genes : TreeFamMFSD12
HOVERGENQ6NUT3
HOGENOMQ6NUT3
Homologs : HomoloGeneMFSD12
Homology/Alignments : Family Browser (UCSC)MFSD12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMFSD12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MFSD12
dbVarMFSD12
ClinVarMFSD12
1000_GenomesMFSD12 
Exome Variant ServerMFSD12
ExAC (Exome Aggregation Consortium)MFSD12 (select the gene name)
Genetic variants : HAPMAP126321
Genomic Variants (DGV)MFSD12 [DGVbeta]
DECIPHER (Syndromes)19:3544197-3557582  ENSG00000161091
CONAN: Copy Number AnalysisMFSD12 
Mutations
ICGC Data PortalMFSD12 
TCGA Data PortalMFSD12 
Broad Tumor PortalMFSD12
OASIS PortalMFSD12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMFSD12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMFSD12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MFSD12
DgiDB (Drug Gene Interaction Database)MFSD12
DoCM (Curated mutations)MFSD12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MFSD12 (select a term)
intoGenMFSD12
Cancer3DMFSD12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMFSD12
Genetic Testing Registry MFSD12
NextProtQ6NUT3 [Medical]
TSGene126321
GENETestsMFSD12
Huge Navigator MFSD12 [HugePedia]
snp3D : Map Gene to Disease126321
BioCentury BCIQMFSD12
ClinGenMFSD12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126321
Chemical/Pharm GKB GenePA134955537
Clinical trialMFSD12
Miscellaneous
canSAR (ICR)MFSD12 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMFSD12
EVEXMFSD12
GoPubMedMFSD12
iHOPMFSD12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:15:04 CET 2017

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