Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MFSD13A (major facilitator superfamily domain containing 13A)

Identity

Alias_namesC10orf77
TMEM180
transmembrane protein 180
Alias_symbol (synonym)FLJ22529
bA18I14.8
Other alias
HGNC (Hugo) MFSD13A
LocusID (NCBI) 79847
Atlas_Id 77918
Location 10q24.32  [Link to chromosome band 10q24]
Location_base_pair Starts at 102461413 and ends at 102477045 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MFSD13A   26196
Cards
Entrez_Gene (NCBI)MFSD13A  79847  major facilitator superfamily domain containing 13A
AliasesC10orf77; TMEM180; bA18I14.8
GeneCards (Weizmann)MFSD13A
Ensembl hg19 (Hinxton)ENSG00000138111 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138111 [Gene_View]  chr10:102461413-102477045 [Contig_View]  MFSD13A [Vega]
ICGC DataPortalENSG00000138111
TCGA cBioPortalMFSD13A
AceView (NCBI)MFSD13A
Genatlas (Paris)MFSD13A
WikiGenes79847
SOURCE (Princeton)MFSD13A
Genetics Home Reference (NIH)MFSD13A
Genomic and cartography
GoldenPath hg38 (UCSC)MFSD13A  -     chr10:102461413-102477045 +  10q24.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MFSD13A  -     10q24.32   [Description]    (hg19-Feb_2009)
EnsemblMFSD13A - 10q24.32 [CytoView hg19]  MFSD13A - 10q24.32 [CytoView hg38]
Mapping of homologs : NCBIMFSD13A [Mapview hg19]  MFSD13A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026182 AK296583 AK301612 AY358808 BC057787
RefSeq transcript (Entrez)NM_024789
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MFSD13A
Cluster EST : UnigeneHs.309069 [ NCBI ]
CGAP (NCI)Hs.309069
Alternative Splicing GalleryENSG00000138111
Gene ExpressionMFSD13A [ NCBI-GEO ]   MFSD13A [ EBI - ARRAY_EXPRESS ]   MFSD13A [ SEEK ]   MFSD13A [ MEM ]
Gene Expression Viewer (FireBrowse)MFSD13A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79847
GTEX Portal (Tissue expression)MFSD13A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14CX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14CX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14CX5
Splice isoforms : SwissVarQ14CX5
PhosPhoSitePlusQ14CX5
Domains : Interpro (EBI)MFS_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MFSD13A
DMDM Disease mutations79847
Blocks (Seattle)MFSD13A
SuperfamilyQ14CX5
Human Protein AtlasENSG00000138111
Peptide AtlasQ14CX5
HPRD12589
IPIIPI00398897   IPI00910744   IPI00432178   IPI01015283   
Protein Interaction databases
DIP (DOE-UCLA)Q14CX5
IntAct (EBI)Q14CX5
FunCoupENSG00000138111
BioGRIDMFSD13A
STRING (EMBL)MFSD13A
ZODIACMFSD13A
Ontologies - Pathways
QuickGOQ14CX5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkMFSD13A
Atlas of Cancer Signalling NetworkMFSD13A
Wikipedia pathwaysMFSD13A
Orthology - Evolution
OrthoDB79847
GeneTree (enSembl)ENSG00000138111
Phylogenetic Trees/Animal Genes : TreeFamMFSD13A
HOVERGENQ14CX5
HOGENOMQ14CX5
Homologs : HomoloGeneMFSD13A
Homology/Alignments : Family Browser (UCSC)MFSD13A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMFSD13A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MFSD13A
dbVarMFSD13A
ClinVarMFSD13A
1000_GenomesMFSD13A 
Exome Variant ServerMFSD13A
ExAC (Exome Aggregation Consortium)MFSD13A (select the gene name)
Genetic variants : HAPMAP79847
Genomic Variants (DGV)MFSD13A [DGVbeta]
DECIPHERMFSD13A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMFSD13A 
Mutations
ICGC Data PortalMFSD13A 
TCGA Data PortalMFSD13A 
Broad Tumor PortalMFSD13A
OASIS PortalMFSD13A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMFSD13A
BioMutasearch MFSD13A
DgiDB (Drug Gene Interaction Database)MFSD13A
DoCM (Curated mutations)MFSD13A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MFSD13A (select a term)
intoGenMFSD13A
Cancer3DMFSD13A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMFSD13A
Genetic Testing Registry MFSD13A
NextProtQ14CX5 [Medical]
TSGene79847
GENETestsMFSD13A
Target ValidationMFSD13A
Huge Navigator MFSD13A [HugePedia]
snp3D : Map Gene to Disease79847
BioCentury BCIQMFSD13A
ClinGenMFSD13A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79847
Chemical/Pharm GKB GenePA162406011
Clinical trialMFSD13A
Miscellaneous
canSAR (ICR)MFSD13A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMFSD13A
EVEXMFSD13A
GoPubMedMFSD13A
iHOPMFSD13A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:25:59 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.