Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MFSD5 (major facilitator superfamily domain containing 5)

Identity

Alias_symbol (synonym)MGC11308
Other aliashsMOT2
HGNC (Hugo) MFSD5
LocusID (NCBI) 84975
Atlas_Id 68943
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53251586 and ends at 53254406 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MFSD5   28156
Cards
Entrez_Gene (NCBI)MFSD5  84975  major facilitator superfamily domain containing 5
AliaseshsMOT2
GeneCards (Weizmann)MFSD5
Ensembl hg19 (Hinxton)ENSG00000182544 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182544 [Gene_View]  chr12:53251586-53254406 [Contig_View]  MFSD5 [Vega]
ICGC DataPortalENSG00000182544
TCGA cBioPortalMFSD5
AceView (NCBI)MFSD5
Genatlas (Paris)MFSD5
WikiGenes84975
SOURCE (Princeton)MFSD5
Genetics Home Reference (NIH)MFSD5
Genomic and cartography
GoldenPath hg38 (UCSC)MFSD5  -     chr12:53251586-53254406 +  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MFSD5  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblMFSD5 - 12q13.13 [CytoView hg19]  MFSD5 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIMFSD5 [Mapview hg19]  MFSD5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074684 AK097576 AK225998 AY358604 BC007703
RefSeq transcript (Entrez)NM_001170790 NM_032889
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MFSD5
Cluster EST : UnigeneHs.654660 [ NCBI ]
CGAP (NCI)Hs.654660
Alternative Splicing GalleryENSG00000182544
Gene ExpressionMFSD5 [ NCBI-GEO ]   MFSD5 [ EBI - ARRAY_EXPRESS ]   MFSD5 [ SEEK ]   MFSD5 [ MEM ]
Gene Expression Viewer (FireBrowse)MFSD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84975
GTEX Portal (Tissue expression)MFSD5
Human Protein AtlasENSG00000182544-MFSD5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6N075   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6N075  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6N075
Splice isoforms : SwissVarQ6N075
PhosPhoSitePlusQ6N075
Domains : Interpro (EBI)MFS_dom    MOT2/MFSD5   
Domain families : Pfam (Sanger)MFS_5 (PF05631)   
Domain families : Pfam (NCBI)pfam05631   
Conserved Domain (NCBI)MFSD5
DMDM Disease mutations84975
Blocks (Seattle)MFSD5
SuperfamilyQ6N075
Human Protein Atlas [tissue]ENSG00000182544-MFSD5 [tissue]
Peptide AtlasQ6N075
HPRD14416
IPIIPI00301554   IPI01014088   IPI01021602   IPI00167364   
Protein Interaction databases
DIP (DOE-UCLA)Q6N075
IntAct (EBI)Q6N075
FunCoupENSG00000182544
BioGRIDMFSD5
STRING (EMBL)MFSD5
ZODIACMFSD5
Ontologies - Pathways
QuickGOQ6N075
Ontology : AmiGOprotein binding  plasma membrane  molybdate ion transmembrane transporter activity  molybdate ion transport  membrane  integral component of membrane  
Ontology : EGO-EBIprotein binding  plasma membrane  molybdate ion transmembrane transporter activity  molybdate ion transport  membrane  integral component of membrane  
NDEx NetworkMFSD5
Atlas of Cancer Signalling NetworkMFSD5
Wikipedia pathwaysMFSD5
Orthology - Evolution
OrthoDB84975
GeneTree (enSembl)ENSG00000182544
Phylogenetic Trees/Animal Genes : TreeFamMFSD5
HOVERGENQ6N075
HOGENOMQ6N075
Homologs : HomoloGeneMFSD5
Homology/Alignments : Family Browser (UCSC)MFSD5
Gene fusions - Rearrangements
Tumor Fusion PortalMFSD5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMFSD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MFSD5
dbVarMFSD5
ClinVarMFSD5
1000_GenomesMFSD5 
Exome Variant ServerMFSD5
ExAC (Exome Aggregation Consortium)ENSG00000182544
GNOMAD BrowserENSG00000182544
Genetic variants : HAPMAP84975
Genomic Variants (DGV)MFSD5 [DGVbeta]
DECIPHERMFSD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMFSD5 
Mutations
ICGC Data PortalMFSD5 
TCGA Data PortalMFSD5 
Broad Tumor PortalMFSD5
OASIS PortalMFSD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMFSD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMFSD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MFSD5
DgiDB (Drug Gene Interaction Database)MFSD5
DoCM (Curated mutations)MFSD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MFSD5 (select a term)
intoGenMFSD5
Cancer3DMFSD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMFSD5
MedgenMFSD5
Genetic Testing Registry MFSD5
NextProtQ6N075 [Medical]
TSGene84975
GENETestsMFSD5
Target ValidationMFSD5
Huge Navigator MFSD5 [HugePedia]
snp3D : Map Gene to Disease84975
BioCentury BCIQMFSD5
ClinGenMFSD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84975
Chemical/Pharm GKB GenePA142671466
Clinical trialMFSD5
Miscellaneous
canSAR (ICR)MFSD5 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMFSD5
EVEXMFSD5
GoPubMedMFSD5
iHOPMFSD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:26:48 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.